GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000449-TA|BGIBMGA000449-PA|undefined
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   0.37 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   7.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   7.9  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 107 QQELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGY 166
           Q ++P    + P+      KQ++    D+ ++ T+  + + + +YNA G +    +GK  
Sbjct: 49  QLKIPCTYHLPPIKRNKQKKQQDSVSDDTPSEATTTTNDDRDPKYNALGNNLDAVRGKVI 108

Query: 167 SGAQQQNKPRPN 178
           S  Q  +   P+
Sbjct: 109 SPTQGSDARGPD 120


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 133 PDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKPRPNKTRTSAEASVHRRG 192
           PD C  +         +++       +N   K +  +++Q+K R NK+  + + S     
Sbjct: 371 PDECNTEEESRINPSTSKFLKQLNKGFNGFTKPFRKSRKQSKNRKNKSSVATQFSEESED 430

Query: 193 IVDHLPKDSSF 203
           I D +   + F
Sbjct: 431 IADSITSSTFF 441


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 123 PPSKQREGAQPDSCAQDTSQPSGEYNAQYNAA 154
           PPS   E  Q  S +Q    PS  YN + N++
Sbjct: 13  PPSVHSERNQKPSSSQFLGVPSSNYNQRENSS 44


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.127    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,631
Number of Sequences: 5004
Number of extensions: 25628
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)