GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000449-TA|BGIBMGA000449-PA|undefined
         (205 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64050.1 68414.m07255 expressed protein                             31   0.73 
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    30   0.96 
At3g07195.1 68416.m00858 proline-rich family protein                   30   0.96 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   3.9  
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein...    28   5.1  
At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1) domain...    28   5.1  
At4g19200.1 68417.m02833 proline-rich family protein contains pr...    27   6.8  
At5g50730.1 68418.m06286 expressed protein ; expression supporte...    27   9.0  

>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 111 PLC--GDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSG 168
           PLC  GDV   +G PPSK       DS  QD S+PS  +N++ N    D        +SG
Sbjct: 338 PLCDAGDVLKRLGLPPSKDL-----DSLLQDASKPS--HNSKNNL---DQQRSAKPPHSG 387

Query: 169 AQQ--QNKPRPNKTRTSAEAS 187
                 ++P    +RT++EA+
Sbjct: 388 LPHFPWSQPFNGSSRTNSEAA 408


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 121 GAPPSKQREGAQPDSCAQDTSQPSGEYNA----QYNAAGGDYYNYQ--GKGYSGAQQQNK 174
           GAPP+    GA P +       P  +Y A    QY  A     NYQ  G G    Q QN 
Sbjct: 325 GAPPANNMGGAPPPNYG---GGPPPQYGAVPPPQYGGAPPQNNNYQQQGSGMQQPQYQNN 381

Query: 175 PRPNK 179
             PN+
Sbjct: 382 YPPNR 386


>At3g07195.1 68416.m00858 proline-rich family protein
          Length = 225

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 20/75 (26%), Positives = 26/75 (34%)

Query: 118 PMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKPRP 177
           P    P  K R  A P           G   +   +AGG Y  Y G      +Q   PRP
Sbjct: 74  PRAPPPTEKNRVKAPPADQLYGGGGSGGGGRSGSGSAGGLYGGYGGGSVGNQRQPPAPRP 133

Query: 178 NKTRTSAEASVHRRG 192
            + R +     + RG
Sbjct: 134 TQPRQNLRGGNNGRG 148


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 117 KPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKPR 176
           K ++ +PP ++R    PD      SQ     +  +    G     +G+G S    +++  
Sbjct: 518 KKVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSSRHQKA 577

Query: 177 PNKTRTSAEASVHRR 191
            +  R  +   V+RR
Sbjct: 578 RSPVRRRSPTPVNRR 592


>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 341

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 156 GDYYNYQGKGYSGAQQQNKPRPNKTRTSAEASVHRRGIVDHLPK 199
           G++Y  +G+G  G  +      NK R  A++  +R G+ DH  K
Sbjct: 246 GNHYGGRGRGNYGRSRGRGRGINKPRGKAKSVCYRCGMDDHWAK 289


>At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein various predicted proteins
           contains Pfam profile PF00564: PB1 domain
          Length = 477

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 109 ELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQG 163
           ELP    +KP    P S  +   QP+   Q ++ P      QY    G   +YQG
Sbjct: 294 ELPPPVFIKPESPEPVSTPKSNPQPEQVMQQSNLPVNS-QWQYAPGPGQQVHYQG 347


>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/51 (31%), Positives = 20/51 (39%)

Query: 118 PMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSG 168
           P  G PP+    GA P +       P G   A Y A G  +  + G G  G
Sbjct: 45  PAGGYPPAGYPPGAYPAAPGGYPPAPGGYPPAGYPAPGAHHSGHSGGGLGG 95


>At5g50730.1 68418.m06286 expressed protein ; expression supported
           by MPSS
          Length = 139

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 123 PPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNK 174
           PP K++E    D   ++  QP     A+ N  GG     +G G + A++ NK
Sbjct: 53  PPEKEKETKDKDEKKKEEGQPKEGKEAKENGGGG---GAKGDG-AAAEEGNK 100


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.127    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,116,319
Number of Sequences: 28952
Number of extensions: 144791
Number of successful extensions: 298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 12,070,560
effective HSP length: 78
effective length of query: 127
effective length of database: 9,812,304
effective search space: 1246162608
effective search space used: 1246162608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)