Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf...    29   1.3  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    29   1.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   2.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   5.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   9.1  

>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
           Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 417 PVDIYSDPDYKMKCIGYWKENLK 439
           PVD+YS P +++KC    +E ++
Sbjct: 78  PVDVYSSPSHELKCCSIIRERIR 100


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 14  FRVNYTMVFQYTNCYYCVKLIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPDQNLI 73
           F     +VF + +  Y +K  VRT++ ++ +    +G + D E T D   RGL   Q  I
Sbjct: 182 FSPGQKIVFDFRS--YNIKATVRTISCVDLL----IGENQDAENTADTSKRGLLTSQTEI 235

Query: 74  TLFSENYVPVNCRSSL 89
             F   +  +  ++S+
Sbjct: 236 QFFKAAHSALRLKASM 251


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 6    VCVNIKAEFRVNYTMVFQYTNCYYCVKLIVRTVNVLETIETPCVGLD 52
            VC   K E  +    +  + +  Y ++L+ +T NVLETI T  V  D
Sbjct: 2429 VCSFTKDEIPLCIGSIISFLSREYHIRLLGKTPNVLETILTSIVSSD 2475


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 418  VDIYSDPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQRADLNRVLMSQAL 473
            V++Y   D+++      +  L +  +  D ++P   YR  + Q+ADL + L    L
Sbjct: 1037 VELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEKELPEDVL 1092


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 359  TQKGDVKFETRILGGVTLSPRPNLYCKINISDFSVCDFDQKTIQIKE 405
            ++KG       ++GG+ LS +        +S FS C  DQ+ + +K+
Sbjct: 1119 SKKGPDVIANALVGGIPLSLKTKEDSLYELSKFSQCGEDQRPMVLKD 1165


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,370
Number of Sequences: 5004
Number of extensions: 120486
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 6
length of query: 559
length of database: 2,362,478
effective HSP length: 76
effective length of query: 483
effective length of database: 1,982,174
effective search space: 957390042
effective search space used: 957390042
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)