Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.26 
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 31   2.4  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.4  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   7.4  
SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  

>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 296 CFDFVPRHHNIIRYRKGLAMIQSNFHTVCSWVQFPNKQQWRYDIF-LRKDPSPIRCP 351
           C +++P H  ++ +RK    ++  FH +   V + + + + Y +F    D  PI CP
Sbjct: 572 CDEYMPSHSKLLIHRKERHDLERAFHCLICGVTYKSWRPFSYHLFQAHSDTPPITCP 628


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 23/92 (25%), Positives = 38/92 (41%)

Query: 73  ITLFSENYVPVNCRSSLEGVWQFAYQNRFRFTGECNHPDAQIKSCQTAGTQFLITNQKFN 132
           +T  S+N VP++  S +  +   A       T   N     I+        F +T +  +
Sbjct: 425 VTRLSKNSVPISFLSQVLIIGSLAETFGLNVTTIGNLAREIIRDIDVDIFVFDVTVEDNS 484

Query: 133 ITYRRCQGMSNTFDGVVEYSCLGHWFVDKNHF 164
              RR + MS TFD +V++     W +D   F
Sbjct: 485 TAKRRKRSMSRTFDDLVQFKEPIEWLIDNETF 516


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 362  GDVKFETRILGGVTLSPRPNLYCKINISDFSVCDFDQKTIQIKENYCLTVDYLGRPVDIY 421
            GD +F        TLSP  N     N   FS+    +K ++  EN C+T    GR  D  
Sbjct: 1181 GDEEFTQTDTKANTLSPEFN-----NSKVFSIPSISEKHLEWFENGCITFMVYGRQEDSI 1235

Query: 422  SDP 424
             DP
Sbjct: 1236 PDP 1238


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 189 DLYIGASITPECNTLKTVEKSPERYRVTPVKAEVVEPGCRLPQNFSGEWVNTAN 242
           D +IG ++T      ++   SP  Y V+ V A    P    P  FSG  VN+ N
Sbjct: 465 DGHIGLAVTTPTAQTRSAITSPHAYTVSSVTA----PAATSPNGFSGPEVNSPN 514


>SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 33 LIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPDQNL 72
          ++ +   +L+ I+    GL+P   PT ++    L+PD+NL
Sbjct: 8  VLAKIEKLLKLIQDKIKGLEPKPNPTENKPAAQLDPDKNL 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,780,203
Number of Sequences: 59808
Number of extensions: 884474
Number of successful extensions: 1418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 5
length of query: 559
length of database: 16,821,457
effective HSP length: 86
effective length of query: 473
effective length of database: 11,677,969
effective search space: 5523679337
effective search space used: 5523679337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)