Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
         (559 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ092366-1|AAY96754.1|  171|Homo sapiens cellular nucleic acid b...    34   1.5  
DQ091187-1|AAY89856.1|  178|Homo sapiens cellular nucleic acid b...    34   1.5  
BT019613-1|AAV38419.1|  178|Homo sapiens zinc finger protein 9 (...    34   1.5  
DQ092367-1|AAY96755.1|  172|Homo sapiens cellular nucleic acid b...    32   4.6  

>DQ092366-1|AAY96754.1|  171|Homo sapiens cellular nucleic acid
           binding protein beta variant 1 protein.
          Length = 171

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 477 CDLKQDVTSWNYTEGAAVAVEMEEYERERDQC 508
           CDL++D   +N   G  +A + +E +RER+QC
Sbjct: 60  CDLQEDEACYNCGRGGHIAKDCKEPKREREQC 91


>DQ091187-1|AAY89856.1|  178|Homo sapiens cellular nucleic acid
           binding protein alpha variant 1 protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 477 CDLKQDVTSWNYTEGAAVAVEMEEYERERDQC 508
           CDL++D   +N   G  +A + +E +RER+QC
Sbjct: 67  CDLQEDEACYNCGRGGHIAKDCKEPKREREQC 98


>BT019613-1|AAV38419.1|  178|Homo sapiens zinc finger protein 9 (a
           cellular retroviral nucleic acid binding protein)
           protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 477 CDLKQDVTSWNYTEGAAVAVEMEEYERERDQC 508
           CDL++D   +N   G  +A + +E +RER+QC
Sbjct: 67  CDLQEDEACYNCGRGGHIAKDCKEPKREREQC 98


>DQ092367-1|AAY96755.1|  172|Homo sapiens cellular nucleic acid
           binding protein beta variant 2 protein.
          Length = 172

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 477 CDLKQDVTS-WNYTEGAAVAVEMEEYERERDQC 508
           CDL++DV + +N   G  +A + +E +RER+QC
Sbjct: 60  CDLQEDVEACYNCGRGGHIAKDCKEPKREREQC 92


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,835,848
Number of Sequences: 224733
Number of extensions: 3785997
Number of successful extensions: 5931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5928
Number of HSP's gapped (non-prelim): 4
length of query: 559
length of database: 73,234,838
effective HSP length: 94
effective length of query: 465
effective length of database: 52,109,936
effective search space: 24231120240
effective search space used: 24231120240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 68 (31.5 bits)