Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00...    31   2.0  
At1g70110.1 68414.m08068 lectin protein kinase family protein co...    30   4.6  
At2g35620.1 68415.m04368 leucine-rich repeat transmembrane prote...    29   6.1  
At1g31420.1 68414.m03848 leucine-rich repeat transmembrane prote...    29   6.1  

>At2g02890.1 68415.m00239 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 531

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 405 ENYCLTVDYLGRPVDIYSDPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQ 460
           + +CL ++Y G+   IY + D  +  I Y+ ++L  YL    + D  ++   WV +
Sbjct: 373 QKFCLLINYKGKLDVIYWEDDVDIHEICYFAKDLDEYLDENLDADATNELHVWVLE 428


>At1g70110.1 68414.m08068 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 666

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 223 VEPGCRLPQNFSGEWVNTANIDADVFINETHIIETYYPDEGRYR 266
           VE   ++ Q F  +  N   ID +  +++T  +  YY D G +R
Sbjct: 137 VELDTKVDQQFEDKDANHVGIDINTLVSDTVALAGYYMDNGTFR 180


>At2g35620.1 68415.m04368 leucine-rich repeat transmembrane protein
           kinase, putative similar to somatic embryogenesis
           receptor-like kinase 1 (SERK1) [Zea mays]
           gi|13897318|emb|CAC37640; contains leucine rich repeat
           (LRR) domains, Pfam:PF00560; contains protein kinase
           domain, Pfam:PF00069
          Length = 589

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 37  TVNVLETIETPCVGLDPDEEPTVDRVCRGLNPD 69
           +++ L +I T CV   PDE PT+ RV + L  +
Sbjct: 542 SLDALLSIATKCVSSSPDERPTMHRVVQLLESE 574


>At1g31420.1 68414.m03848 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069:
           Eukaryotic protein kinase domain
          Length = 592

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 30  CVKLIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPD 69
           C  + + +++ L +I T CV   P+E PT+ RV + L  +
Sbjct: 538 CEGMQMESLDALLSIATQCVSPSPEERPTMHRVVQLLESE 577


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,006
Number of Sequences: 28952
Number of extensions: 608027
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 4
length of query: 559
length of database: 12,070,560
effective HSP length: 85
effective length of query: 474
effective length of database: 9,609,640
effective search space: 4554969360
effective search space used: 4554969360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)