GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879...    32   1.4  
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346...    31   2.4  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    30   4.2  
03_02_0601 - 9754281-9754340,9754978-9755061,9755384-9755585,975...    30   5.6  
03_02_0858 + 11848128-11848287,11848906-11848973,11849281-118494...    29   7.4  
06_03_0994 + 26691518-26691772,26692054-26692183,26692276-266923...    29   9.7  

>03_02_0482 +
           8798931-8799024,8799118-8799253,8799435-8799506,
           8799583-8799654,8799798-8799869,8800133-8800204,
           8800530-8800627,8800892-8801062,8801141-8801473,
           8802494-8802739,8802884-8803017,8803132-8803344
          Length = 570

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 29  YCVKLIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPD 69
           YC  + + T++ L ++   CV   P+E PT+ RV + L  D
Sbjct: 517 YCEGVQIETLDALLSLAKQCVSSLPEERPTMHRVVQMLESD 557


>06_01_0487 -
           3459853-3459917,3460058-3460408,3460991-3461114,
           3461226-3461359,3462277-3462412,3462486-3462834,
           3463994-3464000,3464058-3464226
          Length = 444

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 35  VRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPDQNLITLFSENYVPVNCRSSL 89
           VR V  +  I   C+  D    PT+D V + L P Q+L  + S +Y P + +  L
Sbjct: 371 VRGVQKVAQICYHCLSRDTKSRPTMDEVVKHLTPLQDLNDMASASYRPRSSQRDL 425


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 118 QTAGTQFLITNQKFNITYRRCQGMSNTFDGVVE 150
           QT   Q +IT +  ++TY  CQG+++ F   VE
Sbjct: 329 QTRSHQNMITQEGSSLTYNGCQGITSNFLSTVE 361


>03_02_0601 -
           9754281-9754340,9754978-9755061,9755384-9755585,
           9755663-9755730,9755999-9756094,9756307-9756508,
           9756590-9756661,9756786-9756826,9757016-9757089,
           9757991-9758026,9758486-9758720
          Length = 389

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 437 NLKSYLITFDELDPFSKYRCWVYQRADLNRVLMSQALGPYCDLKQD 482
           ++  Y   F ++DP + ++ W+ Q+ D N  LMS+ + P  D+ ++
Sbjct: 157 SIDEYSSYFGDIDPLAPFKKWIVQQPD-NINLMSEKVHPSYDVFEE 201


>03_02_0858 +
           11848128-11848287,11848906-11848973,11849281-11849403,
           11850796-11851128,11851199-11851321,11851414-11851632
          Length = 341

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 47  PCVGLDPDEEPTVDRVC 63
           PC+G +PD EP V  VC
Sbjct: 192 PCIGAEPDHEPPVHVVC 208


>06_03_0994 +
           26691518-26691772,26692054-26692183,26692276-26692360,
           26692740-26692986
          Length = 238

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 446 DELDPFSKYRCWVYQRADLNRVLMSQALGPYCDLKQ---DVTSWNYTE 490
           ++L P S +R W+ +R+  +R + + +    CD +    DV  W YTE
Sbjct: 57  EDLLPESAHRPWLRRRSTGDRSICTMSSPVQCDAEDARGDVKEWMYTE 104


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,029
Number of Sequences: 37544
Number of extensions: 700200
Number of successful extensions: 1119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 6
length of query: 559
length of database: 14,793,348
effective HSP length: 86
effective length of query: 473
effective length of database: 11,564,564
effective search space: 5470038772
effective search space used: 5470038772
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)