Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000448-TA|BGIBMGA000448-PA|undefined
(559 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical pr... 54 3e-07
Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical p... 54 3e-07
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 29 6.5
>Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 54.0 bits (124), Expect = 3e-07
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 26 NCYYCVKLIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPDQNLITLFSENYVPVNC 85
+CY C+ NVL T C+ DP E ++++ + ++ D + TLF + +PV C
Sbjct: 68 DCYRCLITFPVHENVLHYKTTQCI-FDP--EMSLEKCSQLMSADTTMHTLFRKEAIPVPC 124
Query: 86 RSSLEGVWQFAYQNRFRFTGECNHPDAQIKSCQTAGTQFLITNQKFNITYRRCQGMSNTF 145
+E F YQ G CN + + C Q+ + + Y+ C + N
Sbjct: 125 --PIEAPMNFTYQTN---QGICNSRTSHLHRC----AQY----DRLALHYQACPEIPNRE 171
Query: 146 DGVVEYSCLGHWFVDKNHFFAVANTKESRKDEKYRCFLKNRDDDL-YIGASITPECNTLK 204
+ + C+G W +FA A S E+YRCF+ ++ IG S C L
Sbjct: 172 SAIWQMECIGSWQSFGLQYFA-ARVGYS-AGEQYRCFIHDKTGSSGRIGESADAGCQELT 229
Query: 205 TVEKSPERYRVTPVKAEVVEPGCRLPQNFSGE 236
+ + + V GC P+ E
Sbjct: 230 HIGAAATTLHFR--QDSPVYSGCEFPETLYRE 259
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 285 LTVDGCQKD-YICFDFVPRHHNIIRYRKGLAMIQSNFHTV-CSWVQFPNKQQWRYDIFLR 342
LT+D + D Y C P H N++ Y+ + CS Q + + +F R
Sbjct: 60 LTIDTSRGDCYRCLITFPVHENVLHYKTTQCIFDPEMSLEKCS--QLMSADTTMHTLF-R 116
Query: 343 KDPSPIRCPVAGKFNFT 359
K+ P+ CP+ NFT
Sbjct: 117 KEAIPVPCPIEAPMNFT 133
>Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 54.0 bits (124), Expect = 3e-07
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 26 NCYYCVKLIVRTVNVLETIETPCVGLDPDEEPTVDRVCRGLNPDQNLITLFSENYVPVNC 85
+CY C+ NVL T C+ DP E ++++ + ++ D + TLF + +PV C
Sbjct: 68 DCYRCLITFPVHENVLHYKTTQCI-FDP--EMSLEKCSQLMSADTTMHTLFRKEAIPVPC 124
Query: 86 RSSLEGVWQFAYQNRFRFTGECNHPDAQIKSCQTAGTQFLITNQKFNITYRRCQGMSNTF 145
+E F YQ G CN + + C Q+ + + Y+ C + N
Sbjct: 125 --PIEAPMNFTYQTN---QGICNSRTSHLHRC----AQY----DRLALHYQACPEIPNRE 171
Query: 146 DGVVEYSCLGHWFVDKNHFFAVANTKESRKDEKYRCFLKNRDDDL-YIGASITPECNTLK 204
+ + C+G W +FA A S E+YRCF+ ++ IG S C L
Sbjct: 172 SAIWQMECIGSWQSFGLQYFA-ARVGYS-AGEQYRCFIHDKTGSSGRIGESADAGCQELT 229
Query: 205 TVEKSPERYRVTPVKAEVVEPGCRLPQNFSGE 236
+ + + V GC P+ E
Sbjct: 230 HIGAAATTLHFR--QDSPVYSGCEFPETLYRE 259
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 285 LTVDGCQKD-YICFDFVPRHHNIIRYRKGLAMIQSNFHTV-CSWVQFPNKQQWRYDIFLR 342
LT+D + D Y C P H N++ Y+ + CS Q + + +F R
Sbjct: 60 LTIDTSRGDCYRCLITFPVHENVLHYKTTQCIFDPEMSLEKCS--QLMSADTTMHTLF-R 116
Query: 343 KDPSPIRCPVAGKFNFT 359
K+ P+ CP+ NFT
Sbjct: 117 KEAIPVPCPIEAPMNFT 133
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.5 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 423 DPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQ 460
DP ++ +GYW + KS +T ++ ++YR +Y+
Sbjct: 250 DPKERVLVVGYWVKRSKSRRLTVGQVKCDAQYRVQIYE 287
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 29.5 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 423 DPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQ 460
DP ++ +GYW + KS +T ++ ++YR +Y+
Sbjct: 250 DPKERVLVVGYWVKRSKSRRLTVGQVKCDAQYRVQIYE 287
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.5 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 423 DPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQ 460
DP ++ +GYW + KS +T ++ ++YR +Y+
Sbjct: 250 DPKERVLVVGYWVKRSKSRRLTVGQVKCDAQYRVQIYE 287
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 29.5 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 423 DPDYKMKCIGYWKENLKSYLITFDELDPFSKYRCWVYQ 460
DP ++ +GYW + KS +T ++ ++YR +Y+
Sbjct: 250 DPKERVLVVGYWVKRSKSRRLTVGQVKCDAQYRVQIYE 287
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,447
Number of Sequences: 27539
Number of extensions: 679166
Number of successful extensions: 1329
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 8
length of query: 559
length of database: 12,573,161
effective HSP length: 85
effective length of query: 474
effective length of database: 10,232,346
effective search space: 4850132004
effective search space used: 4850132004
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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