Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000447-TA|BGIBMGA000447-PA|IPR003960|AAA-protein
subdomain, IPR003593|AAA ATPase, IPR009010|Aspartate
decarboxylase-like fold, IPR003338|AAA ATPase VAT, N-terminal,
IPR004201|Cell division protein 48, CDC48, domain 2, IPR003959|AAA
ATPase, central region
         (878 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   6.8  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   9.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   9.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   9.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   9.0  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 73  TIDVKPFKPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLI 118
           T++    KP+    LC +  +    ++ T   +P D + M  D ++
Sbjct: 64  TLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEPPDPQLMRLDNML 109


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 182 KAENSSLNLIGKAKGKQPRQSIINPD 207
           K  NS   + GKA  + P++  I+PD
Sbjct: 34  KFHNSRWMVAGKADPEMPKRMYIHPD 59


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 182 KAENSSLNLIGKAKGKQPRQSIINPD 207
           K  NS   + GKA  + P++  I+PD
Sbjct: 34  KFHNSRWMVAGKADPEMPKRMYIHPD 59


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 378 LLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMRE-YKKIAEDVDSMELAT 426
           L RP R+E+   + L + + +V   N   K  R+   K  +D D  +  T
Sbjct: 29  LCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSIT 78


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 378 LLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMRE-YKKIAEDVDSMELAT 426
           L RP R+E+   + L + + +V   N   K  R+   K  +D D  +  T
Sbjct: 160 LCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSIT 209


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,021
Number of Sequences: 317
Number of extensions: 7176
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 878
length of database: 114,650
effective HSP length: 63
effective length of query: 815
effective length of database: 94,679
effective search space: 77163385
effective search space used: 77163385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)