GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000447-TA|BGIBMGA000447-PA|IPR003960|AAA-protein
subdomain, IPR003593|AAA ATPase, IPR009010|Aspartate
decarboxylase-like fold, IPR003338|AAA ATPase VAT, N-terminal,
IPR004201|Cell division protein 48, CDC48, domain 2, IPR003959|AAA
ATPase, central region
         (878 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           28   1.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            26   4.9  
DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.       25   8.6  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 399 VQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSK 457
           + +L  + ++ R+  +   D+ +  LA      + AEL+  +RA++  A   LI A+ +
Sbjct: 356 IALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRTAKAELDRAIRASKKAAFQELIDAAEE 414


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 278  KIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICK 330
            ++     +++ + GE E+N    +  +++  ++ G N  +  +IFDE + + K
Sbjct: 2004 EVPESTDLIESFYGEVESNPDVRYR-SQQSTRKIGKNQMMESLIFDENEQVIK 2055


>DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 218 LDNEFNAIFRRAFASRVFPPEVVEQL 243
           LD+EF  +F R F + V P ++ + +
Sbjct: 118 LDSEFERLFHRTFQTTVEPVDLTDDI 143


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,627
Number of Sequences: 2123
Number of extensions: 34554
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 4
length of query: 878
length of database: 516,269
effective HSP length: 70
effective length of query: 808
effective length of database: 367,659
effective search space: 297068472
effective search space used: 297068472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)