Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000447-TA|BGIBMGA000447-PA|IPR003960|AAA-protein
subdomain, IPR003593|AAA ATPase, IPR009010|Aspartate
decarboxylase-like fold, IPR003338|AAA ATPase VAT, N-terminal,
IPR004201|Cell division protein 48, CDC48, domain 2, IPR003959|AAA
ATPase, central region
(878 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 495 e-140
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 175 8e-44
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 175 1e-43
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 174 2e-43
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 149 1e-35
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 146 6e-35
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 145 1e-34
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 144 2e-34
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 144 2e-34
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 143 4e-34
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 143 5e-34
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 143 5e-34
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 142 9e-34
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 141 2e-33
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 141 2e-33
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 140 4e-33
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 140 5e-33
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 139 6e-33
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 138 1e-32
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 138 1e-32
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 136 5e-32
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 135 1e-31
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 133 4e-31
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 130 4e-30
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 129 7e-30
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 128 2e-29
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 127 3e-29
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 126 5e-29
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 126 6e-29
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 125 1e-28
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 125 1e-28
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 124 3e-28
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 122 1e-27
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 118 2e-26
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 115 1e-25
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 112 1e-24
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 111 2e-24
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 99 6e-21
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 99 6e-21
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 99 1e-20
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 98 3e-20
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 93 7e-19
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 93 1e-18
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 91 4e-18
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 88 2e-17
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 88 2e-17
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 87 4e-17
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 87 4e-17
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 87 4e-17
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 87 6e-17
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 86 8e-17
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 79 1e-14
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 79 2e-14
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 78 3e-14
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 78 3e-14
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 74 4e-13
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 69 2e-11
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 66 1e-10
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 60 6e-09
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 56 1e-07
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 54 3e-07
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 54 5e-07
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 52 2e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 46 1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 46 1e-04
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 45 2e-04
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 44 3e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 44 3e-04
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 44 3e-04
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 43 0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 42 0.002
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 42 0.002
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 40 0.007
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 40 0.007
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 40 0.010
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 40 0.010
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 38 0.022
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 38 0.029
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.029
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 38 0.029
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 38 0.029
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 37 0.051
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 37 0.067
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 37 0.067
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 37 0.067
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 36 0.16
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 36 0.16
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 36 0.16
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 36 0.16
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 35 0.20
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 35 0.20
At1g73170.1 68414.m08466 expressed protein 35 0.27
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.47
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 33 0.63
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.63
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 33 0.63
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 33 0.63
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 33 0.83
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 33 1.1
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 32 1.4
At1g66880.1 68414.m07601 serine/threonine protein kinase family ... 32 1.4
At1g29150.1 68414.m03567 26S proteasome regulatory subunit, puta... 32 1.4
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 32 1.9
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 32 1.9
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 32 1.9
At1g75490.1 68414.m08770 DRE-binding transcription factor, putat... 32 1.9
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 31 2.5
At4g05340.1 68417.m00816 hypothetical protein 31 2.5
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 31 3.3
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 31 3.3
At5g22370.1 68418.m02610 ATP-binding family protein contains Pfa... 31 3.3
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa... 31 3.3
At1g66510.3 68414.m07557 AAR2 protein family contains Pfam profi... 31 3.3
At1g66510.2 68414.m07556 AAR2 protein family contains Pfam profi... 31 3.3
At1g66510.1 68414.m07555 AAR2 protein family contains Pfam profi... 31 3.3
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 31 3.3
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 31 4.4
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 4.4
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 31 4.4
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 31 4.4
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 30 5.8
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 5.8
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 30 5.8
At2g17110.1 68415.m01974 expressed protein 30 5.8
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 30 7.7
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 30 7.7
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 30 7.7
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 30 7.7
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 30 7.7
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 495 bits (1222), Expect = e-140
Identities = 265/593 (44%), Positives = 374/593 (63%), Gaps = 19/593 (3%)
Query: 1 MKAAKCPSDELAITNCALIHQDDFPS-DIKHIEVS-TGPSQHFVFSIRFYNGVDRGTVGF 58
M PS +LA TN A D + ++ + F+ S+ + + G +
Sbjct: 12 MTVTNTPSADLAFTNLAYCSSSDLRQFSVPGSDLFLANVADSFILSLCGHGSIRDGNIAL 71
Query: 59 SAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLI 118
+A QR+ A +S G + V F P L +TLE +F+ KK T ++ D+ ++
Sbjct: 72 NAIQRRHARVSTGDMVSVSRFVPPENFDLAMLTLELEFV-KKGTKSEQVDAALLSTQLKR 130
Query: 119 QFANQVFTVGQQLAFLFQEKK-VLSLIVKNLEAVDVVALAAGANAVPRRVRMGRLLPDAS 177
++ NQV TVGQ+ F + +L++ ++E D N + R G L D
Sbjct: 131 KYTNQVLTVGQKATFEYHGTNYILTVNRADVEGQD------HTNGIER----GLLSKDTY 180
Query: 178 VQFDKAENSSLNLIGKAKGKQPRQSIINPDWDFGKMGIGGLDNEFNAIFRRAFASRVFPP 237
+ F+ + S + ++ + + + +++ +GIGGL EF IFRRAFASRVFPP
Sbjct: 181 IVFEASNASGIKIVNQREAASSN-IFKHKEFNLESLGIGGLGAEFADIFRRAFASRVFPP 239
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANI 297
V +LG KHVKG+LL+GPPGTGKTLMARQIGKMLN ++PKIVNGP++L K+VGE+E N+
Sbjct: 240 HVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNV 299
Query: 298 RRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVD 357
R LFADAE++++ G S LH+IIFDEIDAICK+RGS TGVHD++VNQLL+KIDGV+
Sbjct: 300 RDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 359
Query: 358 QLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAE 417
LNN+L+IGMTNR+D++DEALLRPGRLEVQ+EI LPDE GR+QIL IHT +M+E +
Sbjct: 360 ALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGT 419
Query: 418 DVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFLH 477
D++ ELA TKN+SGAELEG+V++A S A+NR + + P E + + DFLH
Sbjct: 420 DINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTK--PVEEENIKITMEDFLH 477
Query: 478 ALENDIKPAFGTSAEALEHFLARGIVNWGSPVSSIFEDGQLYIQQARATEASGLVSVLLE 537
A+ +++PAFG S + LE G+V+ G + I++ L ++Q + + S LV+ LLE
Sbjct: 478 AI-YEVQPAFGASTDDLERCRLNGMVDCGHRHNHIYKRAMLLVEQVKVSTRSPLVTCLLE 536
Query: 538 GPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKV-REKYKT 589
GP SGKTALAA + SDFP+VK+ S E M+G +E+ KC I KV + YK+
Sbjct: 537 GPSGSGKTALAATIGIDSDFPYVKIVSAETMIGLSESTKCAHIVKVFEDAYKS 589
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 175 bits (427), Expect = 8e-44
Identities = 123/363 (33%), Positives = 181/363 (49%), Gaps = 21/363 (5%)
Query: 209 DFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQI 268
D G +GG+ + I R + P++ + +G K KGILLYGPPG+GKTL+AR +
Sbjct: 203 DVGYDDVGGVRKQMAQI-RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 261
Query: 269 GKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAI 328
A +NGP+I+ K GESE+N+R+ F EE EK + II DEID+I
Sbjct: 262 ANETGAFF-FCINGPEIMSKLAGESESNLRKAF---EEAEKNAPS-----IIFIDEIDSI 312
Query: 329 CKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQM 388
R G V +V+QLL+ +DG+ +++V+G TNR + ID AL R GR + ++
Sbjct: 313 APKREKTNGE--VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREI 370
Query: 389 EIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAM 448
+IG+PDE GR+++L IHTK M K+AEDVD ++ T + GA+L L A +
Sbjct: 371 DIGVPDEIGRLEVLRIHTKNM----KLAEDVDLERISKDTHGYVGADLAALCTEAALQCI 426
Query: 449 NRLIKASSKVE--VDPEAMEKLMVERTDFLHALENDIKPAFGTSAEALEHFLARGIVNWG 506
+ + +D E + + V F AL N A + + + I
Sbjct: 427 REKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLE 486
Query: 507 SPVSSIFEDGQLYIQQARATEASGL---VSVLLEGPPNSGKTALAAQLAKLSDFPFVKVC 563
+ + E Q ++ E G+ VL GPP GKT LA +A F+ V
Sbjct: 487 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 546
Query: 564 SPE 566
PE
Sbjct: 547 GPE 549
Score = 160 bits (389), Expect = 3e-39
Identities = 106/270 (39%), Positives = 149/270 (55%), Gaps = 20/270 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGL+N + + V PE E+ G KG+L YGPPG GKTL+A+ I A
Sbjct: 482 IGGLENVKREL-QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 540
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARG- 333
V GP++L + GESEAN+R +F D + C ++ FDE+D+I RG
Sbjct: 541 NFIS-VKGPELLTMWFGESEANVREIF-DKARQSAPC-------VLFFDELDSIATQRGG 591
Query: 334 -SVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
S G G D V+NQLL+++DG++ + +IG TNR D+ID ALLRPGRL+ + I L
Sbjct: 592 GSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPL 651
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLI 452
PDE R LNI +R+ IA+DVD LA T+ FSGA++ + + A A+ I
Sbjct: 652 PDEDSR---LNIFKAALRK-SPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENI 707
Query: 453 KASSKVE----VDPEAMEKLMVERTDFLHA 478
+ + E +PEAME+ V+ + A
Sbjct: 708 EKDIEKEKRRSENPEAMEEDGVDEVSEIKA 737
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDM 568
+LL GPP SGKT +A +A + F + PE M
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 278
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 175 bits (425), Expect = 1e-43
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 21/363 (5%)
Query: 209 DFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQI 268
+ G +GG+ + I R + P++ + +G K KGILLYGPPG+GKTL+AR +
Sbjct: 204 EVGYDDVGGVRKQMAQI-RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 262
Query: 269 GKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAI 328
A +NGP+I+ K GESE+N+R+ F EE EK + II DEID+I
Sbjct: 263 ANETGAFF-FCINGPEIMSKLAGESESNLRKAF---EEAEKNAPS-----IIFIDEIDSI 313
Query: 329 CKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQM 388
R G V +V+QLL+ +DG+ +++V+G TNR + ID AL R GR + ++
Sbjct: 314 APKREKTHGE--VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREI 371
Query: 389 EIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGL-VRAAQSTA 447
+IG+PDE GR+++L IHTK M K+AEDVD ++ T + GA+L L AA
Sbjct: 372 DIGVPDEIGRLEVLRIHTKNM----KLAEDVDLERVSKDTHGYVGADLAALCTEAALQCI 427
Query: 448 MNRL-IKASSKVEVDPEAMEKLMVERTDFLHALENDIKPAFGTSAEALEHFLARGIVNWG 506
++ + E+D E + + V F AL N A + + + I
Sbjct: 428 REKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSWEDIGGLE 487
Query: 507 SPVSSIFEDGQLYIQQARATEASGL---VSVLLEGPPNSGKTALAAQLAKLSDFPFVKVC 563
+ + E Q ++ E G+ VL GPP GKT LA +A F+ +
Sbjct: 488 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 547
Query: 564 SPE 566
PE
Sbjct: 548 GPE 550
Score = 161 bits (392), Expect = 1e-39
Identities = 106/285 (37%), Positives = 154/285 (54%), Gaps = 26/285 (9%)
Query: 191 IGKAKGKQPRQSII---NPDWDFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKH 247
+G + R++++ N W+ IGGL+N + + V PE E+ G
Sbjct: 460 LGNSNPSALRETVVEVPNVSWE----DIGGLENVKREL-QETVQYPVEHPEKFEKFGMSP 514
Query: 248 VKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEE 307
KG+L YGPPG GKTL+A+ I A I GP++L + GESEAN+R +F D +
Sbjct: 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPELLTMWFGESEANVREIF-DKARQ 572
Query: 308 EKRCGANSGLHIIIFDEIDAICKARG-SVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIG 366
C ++ FDE+D+I RG SVG G D V+NQLL+++DG++ + +IG
Sbjct: 573 SAPC-------VLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 625
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TNR D+ID ALLRPGRL+ + I LPDE+ R QI K +A+DVD LA
Sbjct: 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIF----KSCLRKSPVAKDVDLRALAK 681
Query: 427 LTKNFSGAELEGLVRAAQSTAMNRLIKASSKVE----VDPEAMEK 467
T+ FSGA++ + + + A+ I+ + E PEAME+
Sbjct: 682 YTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEE 726
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDM 568
+LL GPP SGKT +A +A + F + PE M
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 174 bits (424), Expect = 2e-43
Identities = 122/363 (33%), Positives = 181/363 (49%), Gaps = 21/363 (5%)
Query: 209 DFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQI 268
+ G +GG+ + I R + P++ + +G K KGILLYGPPG+GKTL+AR +
Sbjct: 203 EVGYDDVGGVRKQMAQI-RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 261
Query: 269 GKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAI 328
A +NGP+I+ K GESE+N+R+ F EE EK + II DEID+I
Sbjct: 262 ANETGAFF-FCINGPEIMSKLAGESESNLRKAF---EEAEKNAPS-----IIFIDEIDSI 312
Query: 329 CKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQM 388
R G V +V+QLL+ +DG+ +++V+G TNR + ID AL R GR + ++
Sbjct: 313 APKREKTNGE--VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREI 370
Query: 389 EIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAM 448
+IG+PDE GR+++L IHTK M K+AEDVD ++ T + GA+L L A +
Sbjct: 371 DIGVPDEIGRLEVLRIHTKNM----KLAEDVDLERISKDTHGYVGADLAALCTEAALQCI 426
Query: 449 NRLIKASSKVE--VDPEAMEKLMVERTDFLHALENDIKPAFGTSAEALEHFLARGIVNWG 506
+ + +D E + + V F AL N A + + + I
Sbjct: 427 REKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLE 486
Query: 507 SPVSSIFEDGQLYIQQARATEASGL---VSVLLEGPPNSGKTALAAQLAKLSDFPFVKVC 563
+ + E Q ++ E G+ VL GPP GKT LA +A F+ V
Sbjct: 487 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 546
Query: 564 SPE 566
PE
Sbjct: 547 GPE 549
Score = 164 bits (398), Expect = 3e-40
Identities = 108/289 (37%), Positives = 160/289 (55%), Gaps = 26/289 (8%)
Query: 191 IGKAKGKQPRQSII---NPDWDFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKH 247
+G + R++++ N W+ IGGL+N + + V PE E+ G
Sbjct: 459 LGNSNPSALRETVVEVPNVSWE----DIGGLENVKREL-QETVQYPVEHPEKFEKFGMSP 513
Query: 248 VKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEE 307
KG+L YGPPG GKTL+A+ I A V GP++L + GESEAN+R +F D +
Sbjct: 514 SKGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELLTMWFGESEANVREIF-DKARQ 571
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGSVGGNTG-VHDTVVNQLLSKIDGVDQLNNILVIG 366
C ++ FDE+D+I RG+ G+ G D V+NQLL+++DG++ + +IG
Sbjct: 572 SAPC-------VLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 624
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TNR D+ID ALLRPGRL+ + I LPDE R LNI +R+ +A+DVD LA
Sbjct: 625 ATNRPDIIDSALLRPGRLDQLIYIPLPDEDSR---LNIFKACLRK-SPVAKDVDVTALAK 680
Query: 427 LTKNFSGAELEGLVRAAQSTAMNRLIKASSKVE----VDPEAMEKLMVE 471
T+ FSGA++ + + A A+ I+ + E +PEAME+ MV+
Sbjct: 681 YTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVD 729
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDM 568
+LL GPP SGKT +A +A + F + PE M
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 278
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 149 bits (360), Expect = 1e-35
Identities = 90/230 (39%), Positives = 136/230 (59%), Gaps = 15/230 (6%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
+GGL ++ + R + + PE+ ++G K KG+LLYGPPGTGKTL+AR I ++A
Sbjct: 141 VGGLGDQIREL-RESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA 199
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
K+V+ I+DKY+GES IR +F A E + C II DEIDAI R S
Sbjct: 200 NFLKVVSSA-IIDKYIGESARLIREMFNYAREHQP-C-------IIFMDEIDAIGGRRFS 250
Query: 335 VGGNTGVH-DTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLP 393
G + + +LL+++DG DQL + +I TNR D++D ALLRPGRL+ ++EI LP
Sbjct: 251 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310
Query: 394 DEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAA 443
+E+ R++IL IH + ++ ++D + L + F+GA+L + A
Sbjct: 311 NEQSRMEILKIHASGIAKH----GEIDYEAIVKLGEGFNGADLRNICTEA 356
Score = 33.9 bits (74), Expect = 0.47
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCS 564
VLL GPP +GKT LA +A D F+KV S
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVS 206
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 146 bits (354), Expect = 6e-35
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 15/230 (6%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
+GGL ++ + R + + PE+ ++G K KG+LLYGPPGTGKTL+AR I ++A
Sbjct: 141 VGGLGDQIREL-RESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA 199
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
K+V+ I+DKY+GES IR +F A E + C II DEIDAI R S
Sbjct: 200 NFLKVVSSA-IIDKYIGESARLIREMFNYAREHQP-C-------IIFMDEIDAIGGRRFS 250
Query: 335 VGGNTGVH-DTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLP 393
G + + +LL+++DG D L + +I TNR D++D ALLRPGRL+ ++EI LP
Sbjct: 251 EGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310
Query: 394 DEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAA 443
+E+ R+ IL IH + ++ ++D + L + F+GA+L + A
Sbjct: 311 NEQSRMDILKIHAAGIAKH----GEIDYEAIVKLAEGFNGADLRNICTEA 356
Score = 33.9 bits (74), Expect = 0.47
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCS 564
VLL GPP +GKT LA +A D F+KV S
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVS 206
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 145 bits (351), Expect = 1e-34
Identities = 88/235 (37%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
P+ LG K KG LL GPPGTGKTL+AR + A P + ++ +VG +
Sbjct: 272 PDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG--EAGVPFFSCAASEFVELFVGVGAS 329
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKID 354
+R LF A+ + C I+ DEIDA+ + RG+ +GG + +NQLL+++D
Sbjct: 330 RVRDLFEKAKSKAP-C-------IVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMD 381
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G + ++V+ TNR D++D ALLRPGR + Q+ + PD GRVQIL +H++ K
Sbjct: 382 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRG----KA 437
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLM 469
I +DVD ++A T F+GA+L+ L+ A A R +K SK E+ +A+E+++
Sbjct: 438 IGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIS-DALERII 491
Score = 32.7 bits (71), Expect = 1.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 535 LLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYKT 589
LL GPP +GKT LA +A + PF C+ + V ++R + EK K+
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVELFVGVGASRVRDLFEKAKS 340
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 144 bits (349), Expect = 2e-34
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 18/237 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGLD + I + + PE+ E LG KG+LLYGPPGTGKTL+AR + +
Sbjct: 163 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 221
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
+ V+G +++ KY+GE +R LF A E II DEID+I AR
Sbjct: 222 TFIR-VSGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARME 272
Query: 333 -GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
GS G++ V T++ +LL+++DG + N I V+ TNR D++D+ALLRPGR++ ++E
Sbjct: 273 SGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331
Query: 392 LPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAM 448
P+E+ R IL IH+++M + +D ++A SGAEL+ + A A+
Sbjct: 332 NPNEESRFDILKIHSRKM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 384
Score = 35.5 bits (78), Expect = 0.16
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 509 VSSIFEDGQLYIQQARATEASGLVS---VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSP 565
+ I E +L I+ E+ G+ VLL GPP +GKT LA +A +D F++V
Sbjct: 170 IKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229
Query: 566 E 566
E
Sbjct: 230 E 230
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 144 bits (349), Expect = 2e-34
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 18/237 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGLD + I + + PE+ E LG KG+LLYGPPGTGKTL+AR + +
Sbjct: 163 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 221
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
+ V+G +++ KY+GE +R LF A E II DEID+I AR
Sbjct: 222 TFIR-VSGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARME 272
Query: 333 -GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
GS G++ V T++ +LL+++DG + N I V+ TNR D++D+ALLRPGR++ ++E
Sbjct: 273 SGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331
Query: 392 LPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAM 448
P+E+ R IL IH+++M + +D ++A SGAEL+ + A A+
Sbjct: 332 NPNEESRFDILKIHSRKM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 384
Score = 35.5 bits (78), Expect = 0.16
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 509 VSSIFEDGQLYIQQARATEASGLVS---VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSP 565
+ I E +L I+ E+ G+ VLL GPP +GKT LA +A +D F++V
Sbjct: 170 IKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229
Query: 566 E 566
E
Sbjct: 230 E 230
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 143 bits (347), Expect = 4e-34
Identities = 83/216 (38%), Positives = 122/216 (56%), Gaps = 13/216 (6%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANI 297
+ +++G + GIL++GPPG KTLMAR + V GP++ K+VGESE +
Sbjct: 748 DAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNF-LAVKGPELFSKWVGESEKAV 806
Query: 298 RRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVD 357
R LFA A R A S II FDEID++ RG V D V++QLL ++DG+
Sbjct: 807 RSLFAKA-----RANAPS---IIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLH 858
Query: 358 QLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAE 417
Q + VI TNR D ID ALLRPGR + + +G P+E R IL IH +++ +
Sbjct: 859 QRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKI----PCSS 914
Query: 418 DVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIK 453
D+ ELA++TK ++GA++ + R A A+ ++
Sbjct: 915 DICLKELASITKGYTGADISLICREAAIAALEESLE 950
Score = 128 bits (310), Expect = 1e-29
Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 16/242 (6%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
+GGL E+ AI R S + LG + KG+L++GPPGTGKT +AR +
Sbjct: 387 LGGLSKEY-AILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGV 444
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
VNGP+I+ +Y+GESE + +F R +N+ ++ D++DAI AR
Sbjct: 445 NFFS-VNGPEIISQYLGESEKALDEVF--------RSASNATPAVVFIDDLDAIAPARKE 495
Query: 335 VGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPD 394
G + +V LL+ +DG+ + + ++VI TNR D I+ AL RPGRL+ ++EIG+P
Sbjct: 496 --GGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPS 553
Query: 395 EKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKA 454
R IL+I + MR ++ +LA T F GA+L L A + R +
Sbjct: 554 STQRSDILHIILRGMRH---SLSNIQVEQLAMATHGFVGADLSALCCEAAFVCLRRHLDQ 610
Query: 455 SS 456
SS
Sbjct: 611 SS 612
Score = 34.3 bits (75), Expect = 0.36
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VL+ GPP +GKT+LA A+ S F V PE
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPE 453
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 143 bits (346), Expect = 5e-34
Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 16/227 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
PE +G K KG+LL GPPGTGKTL+A+ I A P ++G + ++ +VG +
Sbjct: 249 PERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEMFVGVGAS 306
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKID 354
+R LF A+E C I+ DEIDA+ + RG+ +GG + +NQLL+++D
Sbjct: 307 RVRDLFKKAKENAP-C-------IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 358
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G + ++V+ TNR D++D ALLRPGR + Q+ + +PD KGR IL +H KK
Sbjct: 359 GFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGN----KK 414
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVD 461
DV +A T FSGA+L L+ A A R + S E+D
Sbjct: 415 FDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEID 461
Score = 35.9 bits (79), Expect = 0.12
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYKTHGAK 593
VLL GPP +GKT LA +A + PF + E F E + +VR+ +K K
Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSE----FVEMFVGVGASRVRDLFK----K 314
Query: 594 LTECAPC 600
E APC
Sbjct: 315 AKENAPC 321
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 143 bits (346), Expect = 5e-34
Identities = 86/242 (35%), Positives = 139/242 (57%), Gaps = 18/242 (7%)
Query: 244 GCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFAD 303
G + G+LLYGPPGTGKTL+A+ + + V GP++++ Y+GESE N+R +F
Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS-VKGPELINMYIGESEKNVRDIFEK 745
Query: 304 AEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV-DQLNNI 362
A + C +I FDE+D++ ARG+ G + GV D VV+Q+L++IDG+ D ++
Sbjct: 746 ARSA-RPC-------VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDL 797
Query: 363 LVIGMTNRRDMIDEALLRPGRLEVQMEIGL-PDEKGRVQILNIHTKRMREYKKIAEDVDS 421
+IG +NR D+ID ALLRPGR + + +G+ D R ++L T++ K++EDV
Sbjct: 798 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKF----KLSEDVSL 853
Query: 422 MELA-TLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEA--MEKLMVERTDFLHA 478
+A F+GA++ L A A R + S ++ E + ++VE DF+ A
Sbjct: 854 YSVAKKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDMPTEEDDPDSVVVEYVDFIKA 913
Query: 479 LE 480
++
Sbjct: 914 MD 915
Score = 32.3 bits (70), Expect = 1.4
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT LA +A F+ V PE
Sbjct: 694 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 726
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 142 bits (344), Expect = 9e-34
Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
P+ LG K KG LL GPPGTGKTL+AR + A P + ++ +VG +
Sbjct: 284 PDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG--EAGVPFFSCAASEFVELFVGVGAS 341
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKID 354
+R LF A+ + C I+ DEIDA+ + RG+ +GG + +NQLL+++D
Sbjct: 342 RVRDLFEKAKSKAP-C-------IVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMD 393
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G + ++V+ TNR D++D ALLRPGR + Q+ + PD GRV+IL +H++ K
Sbjct: 394 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG----KA 449
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLM 469
+ +DVD ++A T F+GA+L+ L+ A A R +K SK E+ +A+E+++
Sbjct: 450 LGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIS-DALERII 503
Score = 32.7 bits (71), Expect = 1.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 535 LLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYKT 589
LL GPP +GKT LA +A + PF C+ + V ++R + EK K+
Sbjct: 299 LLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVELFVGVGASRVRDLFEKAKS 352
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 141 bits (342), Expect = 2e-33
Identities = 97/269 (36%), Positives = 143/269 (53%), Gaps = 33/269 (12%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
+GG + + R + PE +LG KG+L YGPPGTGKTL+AR + +A
Sbjct: 170 VGGCKEQIEKM-REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 228
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
+++ G +++ KYVGE +R LF A + K C I+ FDE+DAI AR
Sbjct: 229 CFIRVI-GSELVQKYVGEGARMVRELFQMARSK-KAC-------IVFFDEVDAIGGARFD 279
Query: 333 GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
VGG+ V T++ ++++++DG D NI V+ TNR D +D ALLRPGRL+ ++E GL
Sbjct: 280 DGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGL--------VRAAQ 444
PD + R QI IHT+ M D+ LA L N +GA++ + +RA +
Sbjct: 339 PDLESRTQIFKIHTRTM----NCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARR 394
Query: 445 ST--------AMNRLIKASSKVEVDPEAM 465
T A+N++IK K P+ M
Sbjct: 395 KTVTEKDFLDAVNKVIKGYQKFSATPKYM 423
Score = 32.3 bits (70), Expect = 1.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VL GPP +GKT LA +A +D F++V E
Sbjct: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 141 bits (341), Expect = 2e-33
Identities = 87/227 (38%), Positives = 129/227 (56%), Gaps = 16/227 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
PE LG K KG+LL GPPGTGKTL+A+ I A P ++G + ++ +VG +
Sbjct: 245 PEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAG--EAGVPFFSLSGSEFIEMFVGVGAS 302
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKID 354
R LF A+ ANS I+ DEIDA+ + RG+ +GG + +NQ+L+++D
Sbjct: 303 RARDLFNKAK-------ANSPC-IVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMD 354
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G ++VI TNR +++D ALLRPGR + Q+ +GLPD +GR +IL +H++ KK
Sbjct: 355 GFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRS----KK 410
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVD 461
+ +DV +A T FSGA+L L+ A A R + E+D
Sbjct: 411 LDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEID 457
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT LA +A + PF + E
Sbjct: 259 VLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 291
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 140 bits (339), Expect = 4e-33
Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 16/227 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
PE +G + KG+LL GPPGTGKTL+A+ I A P ++G + ++ +VG +
Sbjct: 242 PERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEMFVGVGAS 299
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKID 354
+R LF A+E C I+ DEIDA+ + RG+ +GG + +NQLL+++D
Sbjct: 300 RVRDLFKKAKENAP-C-------IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 351
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G + ++V+ TNR D++D ALLRPGR + Q+ + +PD KGR IL +H+ KK
Sbjct: 352 GFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGN----KK 407
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVD 461
V +A T FSGA+L L+ A A R A S E+D
Sbjct: 408 FESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEID 454
Score = 36.3 bits (80), Expect = 0.089
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYKTHGAK 593
VLL GPP +GKT LA +A + PF + E F E + +VR+ +K K
Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE----FVEMFVGVGASRVRDLFK----K 307
Query: 594 LTECAPC 600
E APC
Sbjct: 308 AKENAPC 314
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 140 bits (338), Expect = 5e-33
Identities = 88/252 (34%), Positives = 139/252 (55%), Gaps = 19/252 (7%)
Query: 211 GKMG---IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQ 267
G++G +GG+ + NAI FP ++ + + +LLYGPPG GKT +
Sbjct: 839 GRLGWEDVGGVTDIKNAIKEMIELPSKFP-KIFAKSPLRLRSNVLLYGPPGCGKTHIVGA 897
Query: 268 IGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDA 327
+ R V GP++L+KY+G SE +R +F+ A A + I+ FDE D+
Sbjct: 898 AAAACSLRFIS-VKGPELLNKYIGASEQAVRDIFSKA--------AAAAPCILFFDEFDS 948
Query: 328 ICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQ 387
I RG NTGV D VVNQ L+++DGV+ L + V T+R D++D ALLRPGRL+
Sbjct: 949 IAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRL 1006
Query: 388 MEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTA 447
+ P R++IL + ++++ +A+D+D +A +T+ FSGA+L+ L+ AQ A
Sbjct: 1007 LLCDFPSPPERLEILTVLSRKL----LMADDIDLEPIALMTEGFSGADLQALLSDAQLAA 1062
Query: 448 MNRLIKASSKVE 459
++ + K E
Sbjct: 1063 VHEYLNREDKPE 1074
Score = 64.5 bits (150), Expect = 3e-10
Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 18/326 (5%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVG-ESEANIRRLFADAEEEEK 309
IL+YGPPG+GKT++AR K ++ + + + + E +I + + E
Sbjct: 596 ILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSSVIAE-- 653
Query: 310 RCGANSGLHIIIFDEIDAICKARGSV-GGNTGVHDTVVNQLLSK-IDGVDQLNN------ 361
G +II D++D+I + G V T++ + L+ ID + N
Sbjct: 654 --GLEHAPSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCGIG 711
Query: 362 -ILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVD 420
+ + + I + L GR + +++ P R IL H + R +ED+
Sbjct: 712 PLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILK-HEIQKR-LLDCSEDI- 768
Query: 421 SMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFLHALE 480
+ LA + + +LE LV A A+ R + S + E DF+
Sbjct: 769 LLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPLESNISKYNLVKEDFTRAMHDFVPVAM 828
Query: 481 NDIKPAFGTSAEALEHFLARGIVNWGSPVSSIFEDGQLYIQQARATEASGLVSVLLEGPP 540
DI + + L G+ + + + + E + + + +VLL GPP
Sbjct: 829 RDITKS-ASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPP 887
Query: 541 NSGKTALAAQLAKLSDFPFVKVCSPE 566
GKT + A F+ V PE
Sbjct: 888 GCGKTHIVGAAAAACSLRFISVKGPE 913
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 139 bits (337), Expect = 6e-33
Identities = 89/262 (33%), Positives = 145/262 (55%), Gaps = 18/262 (6%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGL+ + I + A + PE+ E +G K KG++LYG PGTGKTL+A+ + +A
Sbjct: 190 IGGLEAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA 248
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
++V G +++ KY+G+ +R LF A++ I+ DEIDA+ R
Sbjct: 249 TFLRVV-GSELIQKYLGDGPKLVRELFRVADDLSPS--------IVFIDEIDAVGTKRYD 299
Query: 333 GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
+ GG + T++ +LL+++DG D ++ VI TNR + +D ALLRPGR++ ++E L
Sbjct: 300 ANSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 358
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLI 452
PD K R +I IHT +M +AEDV+ E FSGA+++ + A A+
Sbjct: 359 PDIKTRRRIFQIHTSKM----TLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 414
Query: 453 KASSKVEVDPEAMEKLMVERTD 474
+ V+ +A EK+M ++ +
Sbjct: 415 MKVTHVDF-KKAKEKVMFKKKE 435
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 138 bits (334), Expect = 1e-32
Identities = 91/238 (38%), Positives = 133/238 (55%), Gaps = 17/238 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGL+ + + A + E E+LG + KG+LLYGPPGTGKTLMAR NA
Sbjct: 173 IGGLEKQIQELVE-AIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA 231
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
K+ GPQ++ ++G+ +R F A+E+ C II DEIDAI R
Sbjct: 232 TFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKAP-C-------IIFIDEIDAIGTKRFD 282
Query: 333 GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
V G+ V T++ +LL+++DG I VI TNR D++D AL+R GRL+ ++E
Sbjct: 283 SEVSGDREVQRTML-ELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPH 341
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNR 450
P E+ R +IL IH+++M + DV+ ELA T +F+GA+L+ + A A+ R
Sbjct: 342 PTEEARARILQIHSRKM----NVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 395
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT +A A ++ F+K+ P+
Sbjct: 208 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 138 bits (334), Expect = 1e-32
Identities = 91/238 (38%), Positives = 134/238 (56%), Gaps = 17/238 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGL+ + + A + E E+LG + KG+LLYGPPGTGKTLMAR NA
Sbjct: 172 IGGLEKQIQELVE-AIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNA 230
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
K+ GPQ++ ++G+ +R F A+E+ C II DEIDAI R
Sbjct: 231 TFLKLA-GPQLVQMFIGDGAKLVRDAFLLAKEKSP-C-------IIFIDEIDAIGTKRFD 281
Query: 333 GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
V G+ V T++ +LL+++DG + I VI TNR D++D AL+R GRL+ ++E
Sbjct: 282 SEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNR 450
P E+ R +IL IH+++M + DV+ ELA T +F+GA+L+ + A A+ R
Sbjct: 341 PTEEARGRILQIHSRKM----NVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 394
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT +A A ++ F+K+ P+
Sbjct: 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 136 bits (330), Expect = 5e-32
Identities = 89/227 (39%), Positives = 125/227 (55%), Gaps = 17/227 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGG + I R + PE +LG KG+L YGPPG+GKTL+AR + A
Sbjct: 207 IGGCKEQIEKI-REVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGA 265
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR-- 332
++V G +++ KY+GE +R LF A + K C I+ FDEIDAI AR
Sbjct: 266 CFIRVV-GSELVQKYIGEGARMVRELFQMARSK-KAC-------ILFFDEIDAIGGARFD 316
Query: 333 GSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
VG + V T++ ++L ++DG D NI V+ TNR D++D ALLRPGRL+ ++E L
Sbjct: 317 DGVGSDNEVQRTML-EILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCL 375
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGL 439
PD +GR QI IHT+ M D+ LA L N +GA++ +
Sbjct: 376 PDLEGRTQIFKIHTRTM----SCERDIRFELLAGLCPNSTGADIRSV 418
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 135 bits (326), Expect = 1e-31
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 18/262 (6%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGGL+ + I + A + PE+ E +G K KG++LYG PGTGKTL+A+ + +A
Sbjct: 190 IGGLEAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA 248
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
++V G +++ KY+G+ +R LF A++ I+ DEIDA+ R
Sbjct: 249 TFLRVV-GSELIQKYLGDGPKLVRELFRVADDLSPS--------IVFIDEIDAVGTKRYD 299
Query: 335 V--GGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
GG + T++ +LL+++DG D ++ VI TNR + +D ALLRPGR++ ++E L
Sbjct: 300 AHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 358
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLI 452
PD K R +I IHT +M ++EDV+ E FSGA+++ + A A+
Sbjct: 359 PDIKTRRRIFQIHTSKM----TLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 414
Query: 453 KASSKVEVDPEAMEKLMVERTD 474
+ + +A EK+M ++ +
Sbjct: 415 MKVTHPDF-KKAKEKVMFKKKE 435
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 133 bits (322), Expect = 4e-31
Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 22/294 (7%)
Query: 187 SLNLIGKAKGKQPRQSIINPDWDFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCK 246
++NL+ + ++ + + WD +GGLD+ F R + P++ + G
Sbjct: 506 AVNLVQASLTREGFSIVPDVKWD----DVGGLDH-LRLQFNRYIVRPIKKPDIYKAFGVD 560
Query: 247 HVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEE 306
G LLYGPPG GKTL+A+ A I G ++L+KYVGESE IR LF A
Sbjct: 561 LETGFLLYGPPGCGKTLIAKAAANEAGANFMHI-KGAELLNKYVGESELAIRTLFQRA-- 617
Query: 307 EEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIG 366
+ C +I FDE+DA+ +RG G V + ++NQ L ++DG ++ N+ VIG
Sbjct: 618 --RTCAPC----VIFFDEVDALTTSRGKEGA--WVVERLLNQFLVELDGGER-RNVYVIG 668
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELA- 425
TNR D++D A LRPGR + + LP+ R IL K + K I VD +A
Sbjct: 669 ATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASIL----KAIARKKPIDPSVDLDGIAK 724
Query: 426 TLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFLHAL 479
+ FSGA+L LV+ A A+ +I +S E D + + ++ F AL
Sbjct: 725 NNCEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQAL 778
Score = 107 bits (258), Expect = 2e-23
Identities = 110/395 (27%), Positives = 178/395 (45%), Gaps = 52/395 (13%)
Query: 234 VFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGES 293
+ PE +++G K GIL +GPPG GKT +A I KI + +++ G S
Sbjct: 253 ILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKI-SATEVISGVSGAS 311
Query: 294 EANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKI 353
E NIR LF+ A + I+ DEIDAI R + + +V QLL+ +
Sbjct: 312 EENIRELFSKAYR--------TAPSIVFIDEIDAIGSKRENQ--QREMEKRIVTQLLTCM 361
Query: 354 DGVDQLNN----------ILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILN 403
DG + +LVIG TNR D +D AL R GR E ++ + PDE R +IL+
Sbjct: 362 DGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILS 421
Query: 404 IHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLI----------- 452
+ +++R + D +A LT F GA+LE + A A+ R++
Sbjct: 422 VVAQKLR----LEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDG 477
Query: 453 ---KASSKVEVDPEAMEKLMVERTDFLHALENDIKPAFGTSAEALEHFLARGIVNWGSPV 509
K+ ++ E +EKL V+ +DF A+ N ++ + ++ + V +
Sbjct: 478 EDDKSWLRMPWPEEELEKLFVKMSDFEEAV-NLVQASLTREGFSIVPDVKWDDVGGLDHL 536
Query: 510 SSIFEDGQLY-IQQARATEASGL---VSVLLEGPPNSGKTALAAQLAKLSDFPFVKVCSP 565
F + I++ +A G+ LL GPP GKT +A A + F+ +
Sbjct: 537 RLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGA 596
Query: 566 EDMVGFTETAKCLQIRKVREKYKTHGAKLTECAPC 600
E + + ++ L IR + ++ +T CAPC
Sbjct: 597 ELLNKYVGESE-LAIRTLFQRART-------CAPC 623
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 130 bits (314), Expect = 4e-30
Identities = 98/297 (32%), Positives = 149/297 (50%), Gaps = 30/297 (10%)
Query: 198 QPRQSIINPDWDFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPP 257
QP Q IN D +F IGGL N + F ++P E +G+LL GPP
Sbjct: 370 QPLQ--INEDINFDD--IGGLSEYINDLKEMVFFPLLYP-EFFASYSITPPRGVLLCGPP 424
Query: 258 GTGKTLMARQIGKMLNAREPKIV----NGPQILDKYVGESEANIRRLFADAEEEEKRCGA 313
GTGKTL+AR + + K+ G +L K+VGE+E ++ LF +A+ +
Sbjct: 425 GTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPS--- 481
Query: 314 NSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDM 373
II FDEID + R S +H+++V+ LL+ +DG+D +++IG TNR D
Sbjct: 482 -----IIFFDEIDGLAPVRSSK--QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 534
Query: 374 IDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSG 433
ID AL RPGR + + LP + R +IL+IHT R++K ELA + G
Sbjct: 535 IDGALRRPGRFDREFNFSLPGCEARAEILDIHT---RKWKHPPTRELKEELAATCVGYCG 591
Query: 434 AELEGLVRAAQSTAMN----RLIKASSKVEVDPEAMEKLMVERTDFLHALENDIKPA 486
A+L+ L A A ++ + K +D + + VE++ F+ A+ + I PA
Sbjct: 592 ADLKALCTEAAIRAFREKYPQVYTSDDKYAID---VGLVNVEKSHFVEAM-SAITPA 644
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 129 bits (312), Expect = 7e-30
Identities = 80/209 (38%), Positives = 118/209 (56%), Gaps = 13/209 (6%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEAN 296
P+ E LG K KG LL GPPGTGKTL+A+ +A ++G ++ +VG +
Sbjct: 349 PKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE-SAVPFLSISGSDFMEMFVGVGPSR 407
Query: 297 IRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVG--GNTGVHDTVVNQLLSKID 354
+R LF +E ++C + II DEIDAI +ARG G G ++ +NQLL ++D
Sbjct: 408 VRNLF----QEARQCAPS----IIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 459
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G ++V+ TNR D++D+ALLRPGR + Q+ I PD KGR QI I+ K+++ +
Sbjct: 460 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHE 519
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAA 443
S LA LT F+GA++ + A
Sbjct: 520 --PSYYSQRLAALTPGFAGADIANVCNEA 546
Score = 31.1 bits (67), Expect = 3.3
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 535 LLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGF 571
LL GPP +GKT LA A S PF+ + + M F
Sbjct: 364 LLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMF 400
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 128 bits (309), Expect = 2e-29
Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 14/209 (6%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
P+ E LG K KG LL GPPGTGKTL+A+ + P + ++G ++ +VG +
Sbjct: 344 PKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG--ESGVPFLSISGSDFMEMFVGVGPS 401
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVG-GNTGVHDTVVNQLLSKID 354
+R LF +E R A S II DEIDAI +ARG G G ++ +NQLL ++D
Sbjct: 402 RVRHLF-----QEARQAAPS---IIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMD 453
Query: 355 GVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKK 414
G ++V+ TNR D++D+ALLRPGR + Q+ I PD KGR QI I+ K+++ +
Sbjct: 454 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHE 513
Query: 415 IAEDVDSMELATLTKNFSGAELEGLVRAA 443
S LA LT F+GA++ + A
Sbjct: 514 --PSYYSQRLAALTPGFAGADIANVCNEA 540
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 535 LLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGF 571
LL GPP +GKT LA A S PF+ + + M F
Sbjct: 359 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 395
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 127 bits (307), Expect = 3e-29
Identities = 76/210 (36%), Positives = 120/210 (57%), Gaps = 15/210 (7%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
PE +LG + +G+LL G PGTGKTL+A+ + A P I + + ++ YVG +
Sbjct: 347 PEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG--EAEVPFISCSASEFVELYVGMGAS 404
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVG--GNTGVHDTVVNQLLSKI 353
+R LFA A++E II DEIDA+ K+R G+ + +NQLL+++
Sbjct: 405 RVRDLFARAKKEAPS--------IIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEM 456
Query: 354 DGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYK 413
DG D + ++V+G TNR D++D AL RPGR + + + PD+ GR IL +H ++
Sbjct: 457 DGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVS--KKEL 514
Query: 414 KIAEDVDSMELATLTKNFSGAELEGLVRAA 443
+ +DV+ +A++T F+GA+L LV A
Sbjct: 515 PLGDDVNLGSIASMTTGFTGADLANLVNEA 544
Score = 31.1 bits (67), Expect = 3.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMV 569
VLL G P +GKT LA +A ++ PF+ CS + V
Sbjct: 361 VLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFV 395
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 126 bits (305), Expect = 5e-29
Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 17/281 (6%)
Query: 172 LLPDASVQFDKAENSSLNLIGKAKGKQPRQSIINPDWDFGKMGIGGLDNEFNAIFRRAFA 231
L P ASV + N+ ++++ + D IGG D + I R A
Sbjct: 114 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEI-REAVE 172
Query: 232 SRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVG 291
+ E+ +Q+G +G+LLYGPPGTGKT++A+ + A ++V G + + KY+G
Sbjct: 173 LPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLG 231
Query: 292 ESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKAR--GSVGGNTGVHDTVVNQL 349
E +R +F A+E II DE+DAI AR G + V ++ +L
Sbjct: 232 EGPRMVRDVFRLAKENAPA--------IIFIDEVDAIATARFDAQTGADREVQ-RILMEL 282
Query: 350 LSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRM 409
L+++DG DQ N+ VI TNR D +D ALLRPGRL+ ++E LPD + + + + T +M
Sbjct: 283 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKM 342
Query: 410 REYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNR 450
++++VD + + S AE+ + + A A+ +
Sbjct: 343 ----NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 379
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT LA +A + F++V E
Sbjct: 192 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 126 bits (304), Expect = 6e-29
Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 18/248 (7%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANI 297
E+ + G K GILL GPPG GKTL+A+ + I + Q ++ YVG + +
Sbjct: 433 EMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SASQFVEIYVGVGASRV 491
Query: 298 RRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVH-DTVVNQLLSKIDGV 356
R L+ +A E ++ DE+DA+ + RG + G+ G D +NQLL +DG
Sbjct: 492 RALYQEARENAPS--------VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGF 543
Query: 357 DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIA 416
+ ++ I TNR D++D AL+RPGR + ++ I P GR++IL +H ++ K +A
Sbjct: 544 EGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARK----KPMA 599
Query: 417 EDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFL 476
ED+D M +A++T GAEL +V A A+N + +++ D + ++ +E L
Sbjct: 600 EDLDYMAVASMTDGMVGAELANIVEIA---AINMMRDGRTELTTD-DLLQAAQIEERGML 655
Query: 477 HALENDIK 484
+ ++
Sbjct: 656 DRKDRSLE 663
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 125 bits (302), Expect = 1e-28
Identities = 82/250 (32%), Positives = 134/250 (53%), Gaps = 30/250 (12%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
P+ +LG + +G+LL G PGTGKTL+A+ + + P I + + ++ YVG +
Sbjct: 351 PDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDV--PFISCSASEFVELYVGMGAS 408
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGG--NTGVHDTVVNQLLSKI 353
+R LFA A++E II DEIDA+ K+R + + +NQLL+++
Sbjct: 409 RVRDLFARAKKEAPS--------IIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEM 460
Query: 354 DGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYK 413
DG D + ++V+G TNR D++D AL RPGR + + + PD+ GR IL +H ++
Sbjct: 461 DGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVS--KKEL 518
Query: 414 KIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERT 473
+ +DV+ +A++T F+GA+L LV A A + K+ V++
Sbjct: 519 PLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRK---------------SKMTVDKI 563
Query: 474 DFLHALENDI 483
DF+HA+E I
Sbjct: 564 DFIHAVERSI 573
Score = 33.9 bits (74), Expect = 0.47
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMV 569
VLL G P +GKT LA +A SD PF+ CS + V
Sbjct: 365 VLLVGLPGTGKTLLAKAVAGESDVPFIS-CSASEFV 399
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 125 bits (301), Expect = 1e-28
Identities = 101/332 (30%), Positives = 171/332 (51%), Gaps = 31/332 (9%)
Query: 139 KVLSLIVK--NLE-AVDVVALAAGANAVPRRVRMGRLLPDASVQFDKAENSSLNLIGKAK 195
K+L L K NL+ +VD+ A+A N + L +A++ K + SL L ++
Sbjct: 203 KILQLYTKKVNLDPSVDLQAIAISCNGYVG-ADLEALCREATISASKRSSDSLILT--SQ 259
Query: 196 GKQPRQSIINPDWDFG------KM---GIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCK 246
+ +S++ P + G K+ +GGL + ++A + ++G
Sbjct: 260 DFKIAKSVVGPSINRGITVEIPKVTWDDVGGL-KDLKKKLQQAVEWPIKHSAAFVKMGIS 318
Query: 247 HVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEE 306
++GILL+GPPG KT +A+ A + + ++ YVGE EA +R F A
Sbjct: 319 PMRGILLHGPPGCSKTTLAKAAANAAQASFFSL-SCAELFSMYVGEGEALLRNTFQRA-- 375
Query: 307 EEKRCGANSGLHIIIFDEIDAICKARG--SVGGNTGVHDTVVNQLLSKIDGVDQLNNILV 364
R + S II FDE D + RG S ++ V + +++ LL+++DG+++ ILV
Sbjct: 376 ---RLASPS---IIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILV 429
Query: 365 IGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMEL 424
+ TNR ID AL+RPGR ++ + + PD + R +IL +HT+ M + +DVD ++
Sbjct: 430 LAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNM----TLGDDVDLRKI 485
Query: 425 ATLTKNFSGAELEGLVRAAQSTAMNRLIKASS 456
A T F+GAELEGL R + + ++ I A++
Sbjct: 486 AEETDLFTGAELEGLCRESGTVSLRENIAATA 517
Score = 106 bits (255), Expect = 6e-23
Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IGG + A+ +P E LG K +G+LLYGPPGTGKT + R + + +A
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEA-RTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDA 82
Query: 275 REPKIVNGPQILDK-YVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARG 333
IV P + + + GESE +R FA+A + +I DEID +C R
Sbjct: 83 H--LIVLSPHSVHRAHAGESEKVLREAFAEASSH----AVSDKPSVIFIDEIDVLCPRRD 136
Query: 334 SVGGNTGVHDTVVNQLLSKIDGVDQLNN---ILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+ + +QL + +D ++ ++V+ TNR D ID AL R GR + +E+
Sbjct: 137 A---RREQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEV 193
Query: 391 GLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNR 450
P+E+ R++IL ++TK++ + VD +A + GA+LE L R A +A R
Sbjct: 194 STPNEEDRLKILQLYTKKV----NLDPSVDLQAIAISCNGYVGADLEALCREATISASKR 249
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 124 bits (298), Expect = 3e-28
Identities = 82/246 (33%), Positives = 132/246 (53%), Gaps = 23/246 (9%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEAN 296
P++ +++G K G+LL GPPG GKTL+A+ I ++ G + ++ VG A
Sbjct: 452 PDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GSEFVEVLVGVGSAR 510
Query: 297 IRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSV---------GGNTGVHDTVVN 347
IR LF KR N +I DEIDA+ R + T +T +N
Sbjct: 511 IRDLF-------KRAKVNKP-SVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLN 562
Query: 348 QLLSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTK 407
QLL ++DG D ++ +G TNRRD++D ALLRPGR + ++ + P+ KGR+ IL IH
Sbjct: 563 QLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHAS 622
Query: 408 RMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEK 467
++ K+++ VD A+ +SGA+L LV+ A A+ + + + ++D +A+++
Sbjct: 623 KV----KMSDSVDLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSILQSDMD-DAVDR 677
Query: 468 LMVERT 473
L V T
Sbjct: 678 LTVGPT 683
Score = 33.9 bits (74), Expect = 0.47
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYK 588
VLLEGPP GKT +A +A + PF ++ E F E + ++R+ +K
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE----FVEVLVGVGSARIRDLFK 516
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 122 bits (294), Expect = 1e-27
Identities = 90/261 (34%), Positives = 130/261 (49%), Gaps = 25/261 (9%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIV----NGPQILDKYVGE 292
PE + LG +GILL+G PGTGKTL+ R + L +I G L KYVG+
Sbjct: 742 PEFFDNLGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGD 801
Query: 293 SEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSK 352
+E +R LF AE +C + II FDEID + R T H +VV+ LL+
Sbjct: 802 AERQLRLLFQVAE----KCQPS----IIFFDEIDGLAPKRSRQQDQT--HSSVVSTLLAL 851
Query: 353 IDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREY 412
+DG+ +++VIG TN D ID AL RPGR + ++ LP R I+++HT R++
Sbjct: 852 LDGLKSRGSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHT---RKW 908
Query: 413 KKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIK-----ASSKVEVDPE---A 464
K +A T F+GA+++ L A A+NR A++++ V A
Sbjct: 909 PKPVSGYLLKWIAKETAGFAGADIQALCTQAAMIALNRSFPLQESLAAAELGVSSSNRAA 968
Query: 465 MEKLMVERTDFLHALENDIKP 485
+ VE D+L AL P
Sbjct: 969 LPSFSVEERDWLEALSRSPPP 989
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 118 bits (283), Expect = 2e-26
Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 14/199 (7%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIV-NGPQILDKYVGESEANIRRLFADAEEE 307
KG+LL+GPPGTGKTL+A+ I A P NG ++ +VG + + ++ LFA +
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAG--EAGLPFFAANGTDFVEMFVGVAASRVKDLFASS--- 404
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGS--VGGNTGVHDTVVNQLLSKIDGVD-QLNNILV 364
R A S II DEIDAI RG +GG + + Q+L+++DG + +LV
Sbjct: 405 --RSYAPS---IIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLV 459
Query: 365 IGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMEL 424
IG TNR D++D ALLR GR + + +GLP + GR+ IL +H + + ++ E+
Sbjct: 460 IGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEV 519
Query: 425 ATLTKNFSGAELEGLVRAA 443
A T++F+GAEL+ ++ A
Sbjct: 520 AENTEDFTGAELQNVLNEA 538
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPF 559
VLL GPP +GKT LA +A + PF
Sbjct: 352 VLLHGPPGTGKTLLAKAIAGEAGLPF 377
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 115 bits (277), Expect = 1e-25
Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 18/215 (8%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA 295
P+ +LG K KG+LL GPPGTGKT++AR I A P +G + + +VG
Sbjct: 249 PKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAG--EAGVPFFSCSGSEFEEMFVGVGAR 306
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDG 355
+R LF+ A K+C II DEIDAI +R + +NQ+L ++DG
Sbjct: 307 RVRDLFSAA----KKCSPC----IIFIDEIDAIGGSRNPK--DQQYMKMTLNQMLVELDG 356
Query: 356 VDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKI 415
Q I+V+ TN + +D+AL+RPGR + + + PD +GR QIL H ++ +
Sbjct: 357 FKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLK---- 412
Query: 416 AEDVDSMELATLTKNFSGAELEGLVR-AAQSTAMN 449
AEDVD M +A T FSGA+L LV AA AM+
Sbjct: 413 AEDVDLMIIARGTPGFSGADLANLVNVAALKAAMD 447
Score = 36.3 bits (80), Expect = 0.089
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAKCLQIRKVREKYKTHGAK 593
VLL GPP +GKT LA +A + PF CS + F E + R+VR+ + AK
Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFS-CSGSE---FEEMFVGVGARRVRDLFS--AAK 316
Query: 594 LTECAPC 600
+C+PC
Sbjct: 317 --KCSPC 321
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 112 bits (269), Expect = 1e-24
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 20/230 (8%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEANIRR 299
++LG + +G+LL GPPGTGKTL+AR + A P V+ + ++ +VG A IR
Sbjct: 360 KKLGARLPRGVLLVGPPGTGKTLLARAVAG--EAGVPFFSVSASEFVELFVGRGAARIRD 417
Query: 300 LFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQL 359
LF A + II DE+DA+ RG + D +NQLL+++DG +
Sbjct: 418 LFNAARKNSPS--------IIFIDELDAVGGKRGRSFNDE--RDQTLNQLLTEMDGFESD 467
Query: 360 NNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDV 419
++VI TNR + +D AL RPGR ++ + PD++GR +IL IH + + + ED
Sbjct: 468 TKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDV----PLEEDA 523
Query: 420 DSM--ELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEK 467
+ +A+LT F GA+L +V A A R +A ++ ++ EA+E+
Sbjct: 524 FLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDI-MEAIER 572
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL GPP +GKT LA +A + PF V + E
Sbjct: 370 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASE 402
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 111 bits (267), Expect = 2e-24
Identities = 82/223 (36%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVN-GPQILDKYVGESEA 295
P +LG K KGILL G PGTGKTL+A+ I A P G + + +VG
Sbjct: 384 PSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG--EAGVPFFYRAGSEFEEMFVGVGAR 441
Query: 296 NIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDG 355
+R LF A +++ C II DEIDA+ R G+T ++QLL ++DG
Sbjct: 442 RVRSLF-QAAKKKAPC-------IIFIDEIDAVGSTRKQWEGHT---KKTLHQLLVEMDG 490
Query: 356 VDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKI 415
+Q I+V+ TN D++D AL RPGR + + + PD +GR +IL ++ + K +
Sbjct: 491 FEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYL----QGKPM 546
Query: 416 AEDVDSMELATLTKNFSGAELEGLVR-AAQSTAMNRLIKASSK 457
+EDVD +A T F+GA+L LV AA A+ K SS+
Sbjct: 547 SEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSE 589
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 99 bits (238), Expect = 6e-21
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 18/210 (8%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K +GILL+GPPGTGKT++A+ I K A V+ I K+ GE E N+R LF A
Sbjct: 553 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFIN-VSMSTITSKWFGEDEKNVRALFTLAS 611
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
+ II DE+D++ R VG + + + N+ +S DG+ IL
Sbjct: 612 KVSPT--------IIFVDEVDSMLGQRTRVGEHEAMR-KIKNEFMSHWDGLMTKPGERIL 662
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R R E ++ +GLP + R +IL + + +K+ E++D E
Sbjct: 663 VLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKIL----RTLLAKEKVDENLDYKE 716
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIK 453
LA +T+ ++G++L+ L A + LI+
Sbjct: 717 LAMMTEGYTGSDLKNLCTTAAYRPVRELIQ 746
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
+LL GPP +GKT LA +AK + F+ V
Sbjct: 558 ILLFGPPGTGKTMLAKAIAKEAGASFINV 586
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 99 bits (238), Expect = 6e-21
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 18/210 (8%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K +GILL+GPPGTGKT++A+ I K A V+ I K+ GE E N+R LF A
Sbjct: 548 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFIN-VSMSTITSKWFGEDEKNVRALFTLAS 606
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
+ II DE+D++ R VG + + + N+ +S DG+ IL
Sbjct: 607 KVSPT--------IIFVDEVDSMLGQRTRVGEHEAMR-KIKNEFMSHWDGLMTKPGERIL 657
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R R E ++ +GLP + R +IL + + +K+ E++D E
Sbjct: 658 VLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKIL----RTLLAKEKVDENLDYKE 711
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIK 453
LA +T+ ++G++L+ L A + LI+
Sbjct: 712 LAMMTEGYTGSDLKNLCTTAAYRPVRELIQ 741
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
+LL GPP +GKT LA +AK + F+ V
Sbjct: 553 ILLFGPPGTGKTMLAKAIAKEAGASFINV 581
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 98.7 bits (235), Expect = 1e-20
Identities = 85/287 (29%), Positives = 143/287 (49%), Gaps = 30/287 (10%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
+ GL +E + A ++ PE + + + KG+L++GPPGTGKTL+A+ +
Sbjct: 241 VAGL-SEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGT 298
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
V+ + K+ GESE +R LF + R A S I DEID++C +RG
Sbjct: 299 TFFN-VSSATLASKWRGESERMVRCLF-----DLARAYAPS---TIFIDEIDSLCNSRGG 349
Query: 335 VGGNTGVHDTVVNQLLSKIDGVDQLNN--------ILVIGMTNRRDMIDEALLRPGRLEV 386
G + V ++LL ++DGV ++V+ TN IDEAL R RLE
Sbjct: 350 SGEHESSR-RVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEK 406
Query: 387 QMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQST 446
++ I LPD + R ++NI+ + + ++A DV+ ++A T+ +SG +L + R A
Sbjct: 407 RIYIPLPDFESRKALININLRTV----EVASDVNIEDVARRTEGYSGDDLTNVCRDASMN 462
Query: 447 AMNRLIKASSKVEVDPEAMEKLM---VERTDFLHALENDIKPAFGTS 490
M R I ++ E+ + + + V DF A+ ++P+ +S
Sbjct: 463 GMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRK-VQPSVSSS 508
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 97.9 bits (233), Expect = 3e-20
Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K +GILL+GPPGTGKT+MA+ I A V+ I K+ GE E N+R LF A
Sbjct: 446 KPCRGILLFGPPGTGKTMMAKAIANEAGASFIN-VSMSTITSKWFGEDEKNVRALFTLA- 503
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
A II DE+D++ R VG + + + N+ ++ DG+ + + IL
Sbjct: 504 -------AKVSPTIIFVDEVDSMLGQRTRVGEHEAMR-KIKNEFMTHWDGLMSNAGDRIL 555
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R R E ++ +GLP + R +IL R K+ E++D E
Sbjct: 556 VLAATNRPFDLDEAIIR--RFERRIMVGLPSVESREKIL-----RTLLSKEKTENLDFQE 608
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIK 453
LA +T +SG++L+ A + LIK
Sbjct: 609 LAQMTDGYSGSDLKNFCTTAAYRPVRELIK 638
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 93.1 bits (221), Expect = 7e-19
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 21/246 (8%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K KGILL+GPPGTGKT++A+ + A I + I K+ GE E ++ +F+ A
Sbjct: 983 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSSITSKWFGEGEKYVKAVFSLA- 1040
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
+ +I DE+D++ R + G + + + N+ + DG+ +L
Sbjct: 1041 -------SKIAPSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMINWDGLRTKDKERVL 1092
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R RL ++ + LPD R +IL++ + +++AEDVD
Sbjct: 1093 VLAATNRPFDLDEAVIR--RLPRRLMVNLPDSANRSKILSVILAK----EEMAEDVDLEA 1146
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVE---RTDFLHALE 480
+A +T +SG++L+ L A + +++ K +A + M + TD
Sbjct: 1147 IANMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNM 1206
Query: 481 NDIKPA 486
ND K A
Sbjct: 1207 NDFKTA 1212
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 92.7 bits (220), Expect = 1e-18
Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 28/278 (10%)
Query: 203 IINPDWDFGKMG-IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGK 261
+INPD + G IGGL+ A++ P KG+LLYGPPGTGK
Sbjct: 73 VINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGK 132
Query: 262 TLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIII 321
T++A+ I K A V ++ K+ G+++ + +F+ A + + II
Sbjct: 133 TMLAKAIAKESGAVFIN-VRVSNLMSKWFGDAQKLVSAVFSLAYKLQPA--------IIF 183
Query: 322 FDEIDAICKARGSVGGNTGVHDTVVN---QLLSKIDG--VDQLNNILVIGMTNRRDMIDE 376
DE+++ R S H+ + N + ++ DG D ++V+ TNR +DE
Sbjct: 184 IDEVESFLGQRRSTD-----HEAMANMKTEFMALWDGFSTDPHARVMVLAATNRPSELDE 238
Query: 377 ALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAEL 436
A+LR RL EIG+PD + R +IL + K +++ D+D +A L + ++G+++
Sbjct: 239 AILR--RLPQAFEIGIPDRRERAEILKVTLKG----ERVEPDIDFDHIARLCEGYTGSDI 292
Query: 437 EGLVRAAQSTAMNRLIKASSKVE--VDPEAMEKLMVER 472
L + A + ++ A K + +DP + +L +E+
Sbjct: 293 FELCKKAAYFPIREILDAERKGKPCLDPRPLSQLDLEK 330
Score = 33.1 bits (72), Expect = 0.83
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
VLL GPP +GKT LA +AK S F+ V
Sbjct: 122 VLLYGPPGTGKTMLAKAIAKESGAVFINV 150
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 90.6 bits (215), Expect = 4e-18
Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K KGILL+GPPGTGKT++A+ + A I + I K+ GE E ++ +F+ A
Sbjct: 996 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSSITSKWFGEGEKYVKAVFSLA- 1053
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
+ +I DE+D++ R + G + + + N+ + DG+ +L
Sbjct: 1054 -------SKIAPSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRTKDRERVL 1105
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R RL ++ + LPD R +IL++ + ++IA DVD
Sbjct: 1106 VLAATNRPFDLDEAVIR--RLPRRLMVNLPDATNRSKILSVILAK----EEIAPDVDLEA 1159
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEK---LMVERTDFLHALE 480
+A +T +SG++L+ L A + +++ K + +A + + TD
Sbjct: 1160 IANMTDGYSGSDLKNLCVTAAHFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLTM 1219
Query: 481 NDIKPA 486
ND K A
Sbjct: 1220 NDFKAA 1225
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 88.2 bits (209), Expect = 2e-17
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 18/214 (8%)
Query: 246 KHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAE 305
K KGILL+GPPGTGKT++A+ + K +A I + I K+ GE E ++ +F+ A
Sbjct: 853 KPCKGILLFGPPGTGKTMLAKAVAKEADANFINI-SMSSITSKWFGEGEKYVKAVFSLAS 911
Query: 306 EEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNIL 363
+ +I DE+D++ R + + N+ + DG+ + +L
Sbjct: 912 KMSP--------SVIFVDEVDSMLGRREHPREHEASR-KIKNEFMMHWDGLTTQERERVL 962
Query: 364 VIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSME 423
V+ TNR +DEA++R RL ++ +GLPD R IL + + + ++ D+D E
Sbjct: 963 VLAATNRPFDLDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAK----EDLSPDLDIGE 1016
Query: 424 LATLTKNFSGAELEGLVRAAQSTAMNRLIKASSK 457
+A++T +SG++L+ L A + +++ +
Sbjct: 1017 IASMTNGYSGSDLKNLCVTAAHRPIKEILEKEKR 1050
Score = 33.1 bits (72), Expect = 0.83
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
+LL GPP +GKT LA +AK +D F+ +
Sbjct: 858 ILLFGPPGTGKTMLAKAVAKEADANFINI 886
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 88.2 bits (209), Expect = 2e-17
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 18/211 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
KGILL+GPPGTGKTL+A+ + A I G + K+ G++E + LF+ A
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAGANFISI-TGSTLTSKWFGDAEKLTKALFSFA---- 441
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNN--ILVIG 366
II DEID++ ARG + + N+ ++ DG+ ++ IL++G
Sbjct: 442 ----TKLAPVIIFVDEIDSLLGARGGSSEHEATR-RMRNEFMAAWDGLRSKDSQRILILG 496
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TNR +D+A++R RL ++ + LPD + R++IL I + + D +LA
Sbjct: 497 ATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTP----ENLESDFQFEKLAK 550
Query: 427 LTKNFSGAELEGLVRAAQSTAMNRLIKASSK 457
T+ +SG++L+ L AA + L++ K
Sbjct: 551 ETEGYSGSDLKNLCIAAAYRPVQELLQEEQK 581
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 87.4 bits (207), Expect = 4e-17
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 18/245 (7%)
Query: 244 GCKHV-KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFA 302
GC+ KG+LL+GPPGTGKT++ + I A ++ + K++GE E +R LF
Sbjct: 38 GCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATF-FYISASSLTSKWIGEGEKLVRALFG 96
Query: 303 DAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQ-LNN 361
A + +I DEID++ R S G + + Q L +++G D
Sbjct: 97 VASCRQPA--------VIFVDEIDSLLSQRKSDGEHESSR-RLKTQFLIEMEGFDSGSEQ 147
Query: 362 ILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDS 421
IL+IG TNR +DEA R RL ++ I LP + R I+ K+ + D D
Sbjct: 148 ILLIGATNRPQELDEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLF--TLSDDDM 203
Query: 422 MELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFLHALEN 481
+ LT+ +SG++++ LV+ A + +K + + + +V DF AL+
Sbjct: 204 NIICNLTEGYSGSDMKNLVKDATMGPLREALKRGIDI-TNLTKDDMRLVTLQDFKDALQ- 261
Query: 482 DIKPA 486
+++P+
Sbjct: 262 EVRPS 266
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 87.4 bits (207), Expect = 4e-17
Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
KGILL+GPPGTGKTL+A+ + A I G + K+ G++E + LF+ A
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAGANFISI-TGSTLTSKWFGDAEKLTKALFSFA---- 240
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNN--ILVIG 366
+ II DE+D++ ARG + + N+ ++ DG+ ++ IL++G
Sbjct: 241 ----SKLAPVIIFVDEVDSLLGARGGAFEHEATR-RMRNEFMAAWDGLRSKDSQRILILG 295
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TNR +D+A++R RL ++ + LPD + R++IL I + + + +LA
Sbjct: 296 ATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTP----ENLETGFEFDKLAK 349
Query: 427 LTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFLHA 478
T+ +SG++L+ L AA + L++ +K V + + + DF+ +
Sbjct: 350 ETEGYSGSDLKNLCIAAAYRPVQELLQEENKDSVTNASPDLRPLSLDDFIQS 401
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 87.4 bits (207), Expect = 4e-17
Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 248 VKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEE 307
V+G+LL GPPGTGKTL AR + K + +G + D + A I +F+ A
Sbjct: 526 VRGVLLSGPPGTGKTLFARTLAKE-SGLPFVFASGAEFTDSEKSGA-AKINEMFSIARR- 582
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGSVGGNT-GVHDTVVNQLLSKID--GVDQLN---N 361
N+ + + DEIDAI + ++ QL + + G+D+ +
Sbjct: 583 ------NAPAFVFV-DEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQA 635
Query: 362 ILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDS 421
++ I TNR D +D +R GR++ ++ IGLPD K RVQI +H+ K +AED+D
Sbjct: 636 VIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAG----KNLAEDIDF 691
Query: 422 MELATLTKNFSGAELEGLVRAA 443
+L T FSGA++ LV A
Sbjct: 692 GKLVFRTVGFSGADIRNLVNEA 713
Score = 36.7 bits (81), Expect = 0.067
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTETAK 576
VLL GPP +GKT A LAK S PFV E FT++ K
Sbjct: 529 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE----FTDSEK 567
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 86.6 bits (205), Expect = 6e-17
Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 24/260 (9%)
Query: 203 IINP---DWDFGKMGIGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGT 259
+INP D +FG IGGL++ A++ P KG+LLYGPPGT
Sbjct: 76 VINPLHIDVEFGS--IGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGT 133
Query: 260 GKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHI 319
GKT++A+ I + A V ++ K+ G+++ + +F+ A + + I
Sbjct: 134 GKTMLAKAIARESEAVFIN-VKVSNLMSKWFGDAQKLVSAVFSLAYKLQPA--------I 184
Query: 320 IIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDG--VDQLNNILVIGMTNRRDMIDEA 377
I DE+D+ R S + + + ++ DG DQ ++V+ TNR +DEA
Sbjct: 185 IFIDEVDSFLGQRRST--DNEAMSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 242
Query: 378 LLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELE 437
+LR R EIG+PD + R QIL + K + + D++ +A L ++++G+++
Sbjct: 243 ILR--RFPQSFEIGMPDCQERAQILKVVLKG----ESVESDINYDRIARLCEDYTGSDIF 296
Query: 438 GLVRAAQSTAMNRLIKASSK 457
L + A + +++A +
Sbjct: 297 ELCKKAAYFPIREILEAEKE 316
Score = 33.1 bits (72), Expect = 0.83
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
VLL GPP +GKT LA +A+ S+ F+ V
Sbjct: 125 VLLYGPPGTGKTMLAKAIARESEAVFINV 153
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 86.2 bits (204), Expect = 8e-17
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 14/214 (6%)
Query: 237 PEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDK--YVGESE 294
P+ +++G + +G+L+ G GTGKT +A I AR P + Q L+ +VG+S
Sbjct: 446 PKAFQEMGARAPRGVLIVGERGTGKTSLALAIAA--EARVPVVNVEAQELEAGLWVGQSA 503
Query: 295 ANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS-VGGNTGVHDTVVNQLLSKI 353
AN+R LF A + II ++ D RG V H++ +NQLL ++
Sbjct: 504 ANVRELFQTARDLAPV--------IIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVEL 555
Query: 354 DGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYK 413
DG ++ + ++++ T IDEAL RPGR++ + P E R +IL+ + + +
Sbjct: 556 DGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMD-R 614
Query: 414 KIAEDVDSMELATLTKNFSGAELEGLVRAAQSTA 447
++ + VD +++ T EL+ + A +S+A
Sbjct: 615 ELVDLVDWRKVSEKTTLLRPIELKLVPMALESSA 648
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 79.0 bits (186), Expect = 1e-14
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEANIRRLFADAEEE 307
+ +L GPPGTGKT AR I A P + V ++ KY GESE + +F+ A E
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQ--AGIPLLYVPLEAVMSKYYGESERLLGAVFSQANEL 419
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGM 367
GA II DEIDA +R S V++ LL +IDG +Q ++VI
Sbjct: 420 PD--GA-----IIFLDEIDAFAISRDSEMHEATRR--VLSVLLRQIDGFEQEKKVVVIAA 470
Query: 368 TNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATL 427
TNR+ +D AL+ R + + LPD + R +I+ +Y K + ++LA
Sbjct: 471 TNRKQDLDPALI--SRFDSMIMFDLPDLQTRQEII-------AQYAKQLSKPELVQLAQA 521
Query: 428 TKNFSGAELEGLVRAAQSTAMNRLI 452
T+ SG ++ + + A+ T +++I
Sbjct: 522 TEAMSGRDIRDVCQGAERTWASKII 546
Score = 30.7 bits (66), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 533 SVLLEGPPNSGKTALAAQLAKLSDFPFVKV 562
+VL EGPP +GKT+ A +A + P + V
Sbjct: 363 AVLFEGPPGTGKTSCARVIANQAGIPLLYV 392
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 78.6 bits (185), Expect = 2e-14
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 16/194 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+ LLYGPPGTGK+ +A+ + ++ V+ ++ K++GESE + LF A E
Sbjct: 166 RAFLLYGPPGTGKSYLAKAVATEADSTFFS-VSSSDLVSKWMGESEKLVSNLFEMARE-- 222
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLN-NILVIGM 367
S II DEID++C RG G + + +LL ++ GV + +LV+
Sbjct: 223 ------SAPSIIFVDEIDSLCGTRGE-GNESEASRRIKTELLVQMQGVGHNDEKVLVLAA 275
Query: 368 TNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELATL 427
TN +D+A+ R R + ++ I LP+ K R + +H + + + D L
Sbjct: 276 TNTPYALDQAIRR--RFDKRIYIPLPEAKARQHMFKVH---LGDTPHNLTEPDFEYLGQK 330
Query: 428 TKNFSGAELEGLVR 441
T+ FSG+++ V+
Sbjct: 331 TEGFSGSDVSVCVK 344
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 77.8 bits (183), Expect = 3e-14
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
KGILL+GPPGTGKT++A+ + N I + ++ K+ G+SE IR LF A
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATECNTTFFNI-SASSVVSKWRGDSEKLIRVLFDLARHHA 204
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVG-GNTGVHDTVVNQLLSKIDGVDQLNN-ILVIG 366
I DEIDAI RG G + +LL ++DG+ + N + V+
Sbjct: 205 P--------STIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLA 256
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TN +D A+LR RLE ++ + LPD + R + + + + DV L
Sbjct: 257 ATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDV----LVE 310
Query: 427 LTKNFSGAELEGLVRAAQSTAMNR-LIKASSKVEVDPE 463
++ +SG+++ L + A + R L + +V PE
Sbjct: 311 KSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPE 348
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 77.8 bits (183), Expect = 3e-14
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
KGILL+GPPGTGKT++A+ + N I + ++ K+ G+SE IR LF A
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATECNTTFFNI-SASSVVSKWRGDSEKLIRVLFDLARHHA 195
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVG-GNTGVHDTVVNQLLSKIDGVDQLNN-ILVIG 366
I DEIDAI RG G + +LL ++DG+ + N + V+
Sbjct: 196 P--------STIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLA 247
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TN +D A+LR RLE ++ + LPD + R + + + + DV L
Sbjct: 248 ATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDV----LVE 301
Query: 427 LTKNFSGAELEGLVRAAQSTAMNR-LIKASSKVEVDPE 463
++ +SG+++ L + A + R L + +V PE
Sbjct: 302 KSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPE 339
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 74.1 bits (174), Expect = 4e-13
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+G+LL+GPPG GKT++A+ + A V+ + K+VGE+E ++ LF A +
Sbjct: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN-VSASSLTSKWVGEAEKLVKTLFQVAISRQ 308
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNN--ILVIG 366
+I DEID+I R + + ++ L + DGV + +++IG
Sbjct: 309 P--------SVIFMDEIDSIMSTRST--SENEASRRLKSEFLIQFDGVTSNPDDLVIIIG 358
Query: 367 MTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVDSMELAT 426
TN+ +D+A+LR RL ++ + LPD V+ L TK + ++ D D ++
Sbjct: 359 ATNKPQELDDAVLR--RLVKRIYVPLPD--SNVRKLLFKTKLKCQPHSLS-DGDIDKIVK 413
Query: 427 LTKNFSGAELEGLVRAAQSTAMNRL 451
T+ +SG++L+ L A + L
Sbjct: 414 ETEGYSGSDLQALCEEAAMMPIREL 438
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 68.5 bits (160), Expect = 2e-11
Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 215 IGGLDNEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNA 274
IG L+N + + +P + K GILL+GP GTGKT++A+ + A
Sbjct: 737 IGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVATEAGA 796
Query: 275 REPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS 334
++N + ++ E E ++ +F+ A + II DE++++
Sbjct: 797 N---LIN--MSMSRWFSEGEKYVKAVFSLASKISPS--------IIFLDEVESMLHR--- 840
Query: 335 VGGNTGVHDTVVNQLLSKIDGV--DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGL 392
N+ + DG+ ++ +LV+ TNR +DEA++R RL ++ +GL
Sbjct: 841 ------YRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVIR--RLPHRLMVGL 892
Query: 393 PDEKGRVQILNIHTKRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLI 452
PD + R +IL + + + ++ D D E+A++T +SG +L+ L A A R+I
Sbjct: 893 PDARSRSKILKVILSK----EDLSPDFDIDEVASMTNGYSGNDLKNLCVTA---ARRRII 945
Query: 453 KASSKVEVDPEA 464
+ K + + +A
Sbjct: 946 EIVEKEKSERDA 957
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 65.7 bits (153), Expect = 1e-10
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 251 ILLYGPPGTGKTLMARQIGKML----NAREPKI----VNGPQILDKYVGESEANIRRLFA 302
ILL+GPPGTGKT + + + + L N+R P VN + K+ ES + +LF
Sbjct: 205 ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKLFQ 264
Query: 303 DAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDT--VVNQLLSKIDGVDQLN 360
+E + G L ++ DE++++ AR + + D+ VVN LL+++D +
Sbjct: 265 KIQEMVEEDG---NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAP 321
Query: 361 NILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQIL 402
N++++ +N ID A + R +++ +G P R +IL
Sbjct: 322 NVIILTTSNITTAIDVAFV--DRADIKAYVGPPTLHVRYEIL 361
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 60.1 bits (139), Expect = 6e-09
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+ ++ YGPPGTGKT++AR+I + + G + ++ I ++F A++
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGD--VAPLGSQAVTKIHQIFDWAKK-- 426
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMT 368
+N GL ++ DE DA R S + + +N LL + DQ +I+++ T
Sbjct: 427 ----SNKGL-LLFIDEADAFLCERNST-YMSEAQRSALNALLFRTG--DQSRDIVLVLAT 478
Query: 369 NRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAED 418
NRR +D A+ R++ +E LP E+ R ++LN++ + +Y K+ ++
Sbjct: 479 NRRGDLDSAV--TDRIDEVIEFPLPGEEERFKLLNLY---LNKYLKMGDN 523
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 56.0 bits (129), Expect = 1e-07
Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+ IL YGPPGTGKT+ AR++ + + + ++ G + ++ I +LF D ++
Sbjct: 399 RNILFYGPPGTGKTMAARELARR-SGLDYALMTGGDVA-PLGAQAVTKIHQLF-DWSKKS 455
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMT 368
KR GL ++ DE DA R + + +N LL + DQ +I++ T
Sbjct: 456 KR-----GL-LLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG--DQSKDIVLALAT 506
Query: 369 NRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKR 408
NR +D A+ R++ +E LP E+ R ++LN++ ++
Sbjct: 507 NRPGDLDSAV--ADRIDETLEFPLPGEEERFKLLNLYLEK 544
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 54.4 bits (125), Expect = 3e-07
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+ ++ YGPPGTGKT++AR+I + + G + ++ I +F A++
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGD--VAPLGAQAVTKIHEIFDWAKK-- 441
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMT 368
+N GL ++ DE DA R S + + +N LL + DQ +I+++ T
Sbjct: 442 ----SNKGL-LLFIDEADAFLCERNST-YMSEAQRSALNALLFRTG--DQSRDIVLVLAT 493
Query: 369 NRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKR--MREYKKIAED 418
NR +D A+ R++ +E LP E+ R ++L ++ + M + KK +D
Sbjct: 494 NRPGDLDSAV--TDRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDDKKGEKD 543
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 53.6 bits (123), Expect = 5e-07
Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+ ILL+GPPGTGKT+ AR++ + + + ++ G + ++ I LF D ++
Sbjct: 398 RNILLHGPPGTGKTMAARELARK-SGLDYALMTGGDVA-PLGAQAVTKIHELF-DWGKKS 454
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMT 368
KR GL ++ DE DA R + + +N LL + DQ +I++ T
Sbjct: 455 KR-----GL-LLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG--DQSKDIVLALAT 505
Query: 369 NRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKR 408
NR +D A+ R++ +E LP E+ R ++LN++ ++
Sbjct: 506 NRPGDLDSAV--ADRVDEVLEFPLPGEEERFKLLNLYLEK 543
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 533 SVLLEGPPNSGKTALAAQLAKLSDFPF 559
++LL GPP +GKT A +LA+ S +
Sbjct: 399 NILLHGPPGTGKTMAARELARKSGLDY 425
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 51.6 bits (118), Expect = 2e-06
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 23/148 (15%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
+G LLYGPPGTGK+ + I LN I + LD + A +RRL
Sbjct: 248 RGYLLYGPPGTGKSSLIAAIANHLNF---DIYD----LDLTSLNNNAELRRLLMST---- 296
Query: 309 KRCGANSGLHIIIFDEIDAICKARG---SVGGNTGVHDTV-VNQLLSKIDGVDQL--NNI 362
AN I++ ++ID + + N +H TV ++ LL+ +DG+ N
Sbjct: 297 ----ANRS--ILVVEDIDCSIELKDRSTDQENNDPLHKTVTLSGLLNFVDGLWSSCGNER 350
Query: 363 LVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+++ TN R+ +D ALLRPGR+++ + +
Sbjct: 351 IIVFTTNYREKLDPALLRPGRMDMHIHM 378
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 46.0 bits (104), Expect = 1e-04
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRL 300
+++G +G LLYGPPGTGK+ + I M N I + L+ + + +RRL
Sbjct: 292 KRVGKAWKRGYLLYGPPGTGKSSL---IAAMANHLNFDIYD----LELTAVNNNSELRRL 344
Query: 301 FADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQL- 359
+ + + D + ++ LL+ IDG+
Sbjct: 345 LIATANRSILIVEDIDCSLELKDRTSDEPPRESDDIEDPRYKKVTLSGLLNFIDGLWSSC 404
Query: 360 -NNILVIGMTNRRDMIDEALLRPGRLE--VQMEIGLPDEKGRVQILNIHTKRMREYKKIA 416
+ ++I TN ++ +D ALLRPGR++ + M P + + + K R + KI
Sbjct: 405 GDERIIIFTTNYKEKLDAALLRPGRMDMHIHMSYCTPSTFKALALNYLEIKEHRLFSKIE 464
Query: 417 EDVDSMEL 424
E +++ E+
Sbjct: 465 EGIEATEV 472
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 45.6 bits (103), Expect = 1e-04
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRL 300
+++G +G LLYGPPGTGK+ + + M N + I + L + +A++R L
Sbjct: 238 KRVGKAWKRGYLLYGPPGTGKSSL---VAAMANYLKFDIYD----LQLASVQGDAHLRSL 290
Query: 301 FADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQL- 359
+ + + + + +G ++ LL+ IDG+
Sbjct: 291 LLATNNSSILLIEDIDCSVDLPTRLQPPTETSQPLGAVQVSKPLTLSGLLNCIDGLWSSC 350
Query: 360 -NNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
N ++I TN ++ +D ALLRPGR+++ + +G
Sbjct: 351 GNERIIIFTTNNKEKLDPALLRPGRMDMHIYMG 383
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 45.2 bits (102), Expect = 2e-04
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 26/163 (15%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANI 297
E +++G +G LLYGPPGTGK+ + + M N + + + L ++++
Sbjct: 243 EFYKRVGKAWKRGYLLYGPPGTGKSSL---VAAMANYLKFDVYD----LQLASVMRDSDL 295
Query: 298 RRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSV-----GGNTGVHD--TVVNQLL 350
RRL A I++ ++ID + G N G ++ LL
Sbjct: 296 RRLLL----------ATRNRSILVIEDIDCAVDLPNRIEQPVEGKNRGESQGPLTLSGLL 345
Query: 351 SKIDGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
+ IDG+ + ++I TN +D +D ALLRPGR+++ + +G
Sbjct: 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMG 388
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 44.4 bits (100), Expect = 3e-04
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAR----EPKIVNGPQILDKYVGES 293
E +++G +G LLYGPPGTGK+ M + +LN E V L K + +
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMANLLNYNIYDLELTAVKNNSELKKLLTAT 290
Query: 294 EANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTV-VNQLLSK 352
+ + D + C A+ + I +R G ++V ++ LL+
Sbjct: 291 SSKSIIVIEDID-----CSAD-----FTSNRIKKESNSRERYGKEDKDENSVTLSGLLNF 340
Query: 353 IDGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
IDG+ +V+ TN + +D AL+R GR+++ +E+
Sbjct: 341 IDGIWSACGQERIVVFTTNHLEKLDPALIRRGRMDMHIEL 380
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 44.4 bits (100), Expect = 3e-04
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRL 300
+++G +G LLYGPPGTGKT + I L I D + A++R
Sbjct: 238 KRVGKPWKRGYLLYGPPGTGKTSLVAAIANYLKF---------DIYDLQL----ASVRE- 283
Query: 301 FADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNT-----GVHDTVVNQLLSKIDG 355
DA+ G + I++ ++ID + T G ++ LL+ IDG
Sbjct: 284 --DADLRRLLLGTTNS-SILLVEDIDCAVDLHTRLQPKTQDDTKGSSMLTLSGLLTCIDG 340
Query: 356 VDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
+ + +VI T ++ +D ALLRPGR+++ + +G
Sbjct: 341 LWSSCGDERIVIFTTTHKERLDPALLRPGRMDMHIHMG 378
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 44.4 bits (100), Expect = 3e-04
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDK--YVGES-EANIRRLFADAEEE 307
+LL GP G+GKTL+A+ + +++N P ++ L + YVG+ E+ + +L AE
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNV--PFVIADATTLTQAGYVGDDVESILHKLLTVAEFN 368
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKI 353
+ A G I+ DE+D I K S+ + V V Q L K+
Sbjct: 369 VQ--AAQQG--IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKL 410
Score = 35.1 bits (77), Expect = 0.20
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 533 SVLLEGPPNSGKTALAAQLAKLSDFPFV 560
+VLL GP SGKT LA LA+L + PFV
Sbjct: 310 NVLLMGPTGSGKTLLAKTLARLVNVPFV 337
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 42.7 bits (96), Expect = 0.001
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDK--YVGES-EANIRRLFADAEEE 307
ILL GP G+GKTL+A+ + + +N P ++ L + YVGE E+ + +L A+
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNV--PFVIADATTLTQAGYVGEDVESILYKLLTVADYN 283
Query: 308 EKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKI 353
A G I+ DE+D I K S+ + V V Q L K+
Sbjct: 284 V--AAAQQG--IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 325
Score = 33.1 bits (72), Expect = 0.83
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 533 SVLLEGPPNSGKTALAAQLAKLSDFPFV 560
++LL GP SGKT LA LA+ + PFV
Sbjct: 225 NILLMGPTGSGKTLLAKTLARFVNVPFV 252
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 41.5 bits (93), Expect = 0.002
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAR----EPKIVNGPQILDKYVGESEANIRRLFADA 304
+G LLYGPPGTGK+ + I +N + + V +L + + +E L D
Sbjct: 32 RGYLLYGPPGTGKSSLVAAIANFMNYSIYDLQIQSVKDDAMLRQILTSTENRSILLIEDL 91
Query: 305 EEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGV--DQLNNI 362
+ GA++ DE + + V ++ LL+ +DG+ +
Sbjct: 92 D----CSGADTTCRKENKDETEYGENQNKKKKKDPKV---TLSGLLNFVDGLWSSCVEER 144
Query: 363 LVIGMTNRRDMIDEALLRPGRLEVQM 388
++I TN ++ +D ALLRPGR++V +
Sbjct: 145 IIIFTTNHKEKLDPALLRPGRMDVHI 170
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANI 297
E +++G +G LLYGPPGTGK+ + + L D + + +
Sbjct: 233 EFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK------------FDVF----DLEL 276
Query: 298 RRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHD----TVVNQLLSKI 353
++ D E ++ + + I++ ++ID + R N ++ +L+ I
Sbjct: 277 SSIY-DNGELKRVLLSTTNRSILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFI 335
Query: 354 DGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
DG+ + +++ TN ++ +D ALLRPGR++V + +
Sbjct: 336 DGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDVHINM 374
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 39.9 bits (89), Expect = 0.007
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRL 300
+++G + LYGPPGTGK+ + + L I D + AN++
Sbjct: 213 KRVGKAWKRSYFLYGPPGTGKSSLVAAMANYLKF---------DIYDLQL----ANVQ-- 257
Query: 301 FADAEEEEKRCGANSGLHIIIFDEIDA-------ICKARGSVGGNTGVHDTVVNQLLSKI 353
DA+ N+ I++ ++ID + A ++G G ++ LL+ I
Sbjct: 258 -GDAQLRSLLLATNNS-SILLVEDIDCSVDLPTRLQPATTTLGAPKGSTPLTLSGLLNCI 315
Query: 354 DGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEIG 391
DG+ + +VI TN ++++D ALLRPG +++ + +G
Sbjct: 316 DGLWSSCGDERIVIFTTNNKEVLDPALLRPGCMDMHIYLG 355
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 39.9 bits (89), Expect = 0.007
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 225 IFRRAFASRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQ 284
IFR A R E +++G +G LLYGPPGTGK+ M I M N + I +
Sbjct: 214 IFRDLVAFRD-GKEYYDRIGKAWKRGYLLYGPPGTGKSTM---IAAMANLMKYNIYD--- 266
Query: 285 ILDKYVGESEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGS------VGGN 338
L+ + +++L A + II+ ++ID G G
Sbjct: 267 -LELTSIGNNWELKKLLI----------ATTNKSIIVIEDIDCSLDLTGEREVKDLKGDK 315
Query: 339 TGVHDTVV--NQLLSKIDGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
G V + LL+ IDG+ +++ TN +D+AL+R GR+++ +E+
Sbjct: 316 EGKKSNAVTLSGLLNFIDGIWSACGQERILVFTTNHVGKLDQALIRRGRMDMHIEL 371
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 39.5 bits (88), Expect = 0.010
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDK--YVGES-EANIRRLF--ADAE 305
+LL GP G+GKTL+A+ + +++N P + L + YVGE E+ + +L+ +
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNV--PFAIADATSLTQAGYVGEDVESILYKLYVVSGCN 322
Query: 306 EEEKRCGANSGLHIIIFDEIDAI-CKARGSVGGNTGVHDTVVNQLLSKIDG 355
EE + G I+ DE+D + K+ S GG + V LL ++G
Sbjct: 323 VEEAQRG------IVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEG 367
Score = 32.3 bits (70), Expect = 1.4
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 533 SVLLEGPPNSGKTALAAQLAKLSDFPF 559
+VLL GP SGKT LA LA++ + PF
Sbjct: 264 NVLLLGPTGSGKTLLAKTLARIVNVPF 290
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 39.5 bits (88), Expect = 0.010
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAR----EPKIVNGPQILDKYVGES 293
E +++G +G LL+GPPGTGK+ M + LN E + L K + +
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANHLNYSIYDLELTAIRNNSELRKLLTAT 285
Query: 294 EANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKI 353
+ + D + G ++ D G G ++ LL+ I
Sbjct: 286 SSKSIIVIEDIDCSLDLTGKRKKEKNLMTSRED------GEQGTEEDKSFVTLSGLLNFI 339
Query: 354 DGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
DG+ ++I TN + +D AL+R GR+++ +E+
Sbjct: 340 DGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIEL 378
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 38.3 bits (85), Expect = 0.022
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLN-----AREPKIVNGPQ---ILDKYVGE 292
+++G +G LLYGPPGTGK+ M + +LN I N + IL +
Sbjct: 229 KKIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYSIYDLELTAIQNNSELRKILTATSNK 288
Query: 293 SEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSK 352
S I + + KR S L I + G ++ LL+
Sbjct: 289 SIIVIEDIDCSLDLTGKRKKKESNL---------MIWRKDGDQDNEENKSFVTLSGLLNF 339
Query: 353 IDGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
IDG+ +++ TN +D AL+R GR+++ +E+
Sbjct: 340 IDGIWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIEL 379
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 37.9 bits (84), Expect = 0.029
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 244 GCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEANIRRLFA 302
G K I L GPPG GKT + R I + LN + + V G + + G + +
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYVGAMPG 512
Query: 303 DAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGV------HDTVVNQLLSKIDGV 356
+ K G + L ++ DEID + RG G + N L +D
Sbjct: 513 KMVQCLKSVGTANPL--VLIDEIDKL--GRGHAGDPASALLELLDPEQNANFLDHYLDVT 568
Query: 357 DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIG-LPDEK 396
L+ +L + N DMI LL R+EV G + DEK
Sbjct: 569 IDLSKVLFVCTANVIDMIPNPLL--DRMEVISIAGYITDEK 607
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.9 bits (84), Expect = 0.029
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLN----AREPKIVNGPQILDKYVGESEAN 296
E+ G +G LLYGPPGTGK+ M + L E V L K + ++ +
Sbjct: 230 ERTGRAWKRGYLLYGPPGTGKSSMIAAMANYLRYDIYDLELTEVKSNSELRKLLMKTSSK 289
Query: 297 IRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTV-VNQLLSKIDG 355
+ D + N ++E + + +G + G +T+ ++ LL+ DG
Sbjct: 290 SIIVIEDIDCSINLTNRNKKQSTGSYNEPEML--TGSGLGDDLGDGNTITLSGLLNFTDG 347
Query: 356 VDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+ + + + TN + +D ALLR GR+++ + +
Sbjct: 348 LWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIHM 384
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 37.9 bits (84), Expect = 0.029
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 10/191 (5%)
Query: 244 GCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEANIRRLFA 302
G K I L GPPG GKT + R I + L+ + + V G + + G + + +
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPG 495
Query: 303 DAEEEEKRCGANSGLHIIIFDEIDAI--CKARGSVGGNTGVHDTVVN-QLLSKIDGVD-Q 358
+ K G + L I+FDEID + C V D N + L V
Sbjct: 496 KMVQCLKSVGTANPL--ILFDEIDKLGRCHTGDPASALLEVMDPEQNAKFLDHFLNVTID 553
Query: 359 LNNILVIGMTNRRDMIDEALLRPGRLEV-QMEIGLPDEKGRVQILNIHTKRMREYKKIAE 417
L+ +L + N +MI LL R+EV + + DEK + + K R+ E
Sbjct: 554 LSKVLFVCTANVIEMIPGPLL--DRMEVIDLSGYVTDEKMHIARDYLVKKTCRDCGIKPE 611
Query: 418 DVDSMELATLT 428
VD + A L+
Sbjct: 612 HVDLSDAALLS 622
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 37.9 bits (84), Expect = 0.029
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 242 QLGCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLF 301
+LG + LLYGP GTGK+ + L+ I L K V +S+ + L
Sbjct: 225 RLGRVWKRSYLLYGPSGTGKSSFVAAMANFLDYDVYDID-----LSKVVDDSDLKMLLL- 278
Query: 302 ADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNN 361
G +I+ +++D + + +G+ + + +LS ++
Sbjct: 279 -----------QTRGKSVIVIEDLDRHLSTKSTAVNLSGILN-FTDSILSSCTADER--- 323
Query: 362 ILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPD 394
I+V MT + + ID A+LRPGR++V + L D
Sbjct: 324 IMVFTMTGK-EQIDPAMLRPGRVDVHIHFPLCD 355
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 37.1 bits (82), Expect = 0.051
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 243 LGCKHVKGILLYGPPGTGKTLMARQIGKMLNA----REPKI--VNGPQILDKYVGESEAN 296
+G + + G PGTGKT++AR +GK+LN K+ V ++ ++VG +
Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPK 299
Query: 297 IRRLFADAE 305
RR +AE
Sbjct: 300 TRRKIQEAE 308
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 36.7 bits (81), Expect = 0.067
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 249 KGILLYGPPGTGKT----LMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADA 304
+G LLYGPPGTGK+ MA +G + E V+ L K + ++ + + D
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHSNSELRKLLMKTSSKSIIVIEDI 297
Query: 305 E-----EEEKRCGANSGLHIIIFDEIDAICKARGSVG-GNTGVHDTVV--NQLLSKIDGV 356
+ K+ +N +D GS G G G + + + LL+ DG+
Sbjct: 298 DCSINLTNRKKNSSNVSSQRSYYDAETRNGSGSGSGGSGEEGGNGNTITLSGLLNFTDGL 357
Query: 357 DQL--NNILVIGMTNRRDMIDEALLRPGRLEVQM 388
+ + + TN + +D ALLR GR+++ +
Sbjct: 358 WSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 391
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 36.7 bits (81), Expect = 0.067
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEE-- 306
+G LL+GPPGTGK+ M I + N E + + L+ + A +++L D +
Sbjct: 229 RGYLLFGPPGTGKSTM---ISAIANFLEYDVYD----LELTTVKDNAELKKLMLDTKGKS 281
Query: 307 ----EEKRCGANSGLHIIIFDEIDAICKARGS------VGGNTGVHDTVVNQLLSKIDGV 356
E+ C H E D + + V GN + T ++ LL+ IDG+
Sbjct: 282 IVVIEDIDCSLELTEHRKKKKEEDEDKEEKKEAENLKRVSGNNESNVT-LSGLLNAIDGL 340
Query: 357 DQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+ ++I TN D +D AL+R GR++ +E+
Sbjct: 341 WSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHIEM 376
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 36.7 bits (81), Expect = 0.067
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKR 310
+LLYGPPGTGKT + + L PK N L+ +R+ D +
Sbjct: 75 LLLYGPPGTGKTSTILAVARKLYG--PKYRNMILELNASDDRGIDVVRQQIQDFASTQSF 132
Query: 311 CGANSGLHIIIFDEIDAICK 330
S + +++ DE DA+ K
Sbjct: 133 SLGKSSVKLVLLDEADAMTK 152
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 35.5 bits (78), Expect = 0.16
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLN----AREPKIVNGPQILDKYVGESEAN 296
+++G +G LL+GPPGTGK+ M + +L E V L + + E+
Sbjct: 236 KKIGKAWKRGYLLFGPPGTGKSTMIAAMANLLEYDVYDLELTTVKDNTELRRLLIETSGK 295
Query: 297 IRRLFADAEEEEKRCGANSGL--HIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKID 354
+ D + G DE I K G ++ LL+ ID
Sbjct: 296 SIIVIEDIDCSLDLTGQRKQKKDEEEDEDETSPIEKQMKKDQGENKGSKVTLSGLLNFID 355
Query: 355 GVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
G+ +++ TN D +D AL+R GR++ +E+
Sbjct: 356 GLWSACGGERIIVFTTNFIDKLDPALIRKGRMDKHIEM 393
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 35.5 bits (78), Expect = 0.16
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 249 KGILLYGPPGTGKTLMARQIGKML-------NAREPKIVNGPQILDKYVGESEAN-IRRL 300
K +LL G PG GKT A+ + +ML NA + + I K +G S AN ++ L
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIA-KGIGGSNANSVKEL 452
Query: 301 FADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKI 353
+ + ++I DE+D + S G GV D + + +SKI
Sbjct: 453 VNNEAMAANFDRSKHPKTVLIMDEVDGM-----SAGDRGGVADLIASIKISKI 500
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 35.5 bits (78), Expect = 0.16
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKML-----NAREPKIVNGPQILDKYVGE 292
E +++G +G LLYGPPGTGK+ + + L + I Q+ +
Sbjct: 234 EFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYENAQLKSILLST 293
Query: 293 SEANIRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSK 352
+ +I + E+ C + ++ E D + G ++ LL+
Sbjct: 294 TNRSILVI------EDIDCSSAE----VVDREADEYQEYEEGYYGR-----VTLSGLLNF 338
Query: 353 IDGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+DG+ + +++ TN ++ +D ALLRPGR+++ + +
Sbjct: 339 VDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDMHINM 378
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.5 bits (78), Expect = 0.16
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEE-- 306
+G LLYGPPGTGK+ M I + + QI + +R + +
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANHMKYH----IYDLQIQSV---RDDGELREILTSTKNRS 292
Query: 307 ----EEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVV--NQLLSKIDGVDQL- 359
E+ CGA++ + + + G + + + LL+ +DG+
Sbjct: 293 ILLIEDIDCGADASRRRQSKKKEEDGGEDDGEPQKRKKKFEVGISLSGLLNFVDGLWSSC 352
Query: 360 -NNILVIGMTNRRDMIDEALLRPGRLEVQM 388
++I TN ++ +D ALLRPGR++V +
Sbjct: 353 GEEKIIIFTTNHKEKLDPALLRPGRMDVHI 382
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 35.1 bits (77), Expect = 0.20
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESEA---NIRRLFADA 304
K +LL GPPGTGKT +A I + L ++ P + G ++ V ++E N RR
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLR 126
Query: 305 EEEEK 309
+E K
Sbjct: 127 IKETK 131
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 35.1 bits (77), Expect = 0.20
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLN----AREPKIVNGPQILDKYVGESEAN 296
+++G +G LL+GPPGTGK+ M + L E V L + + E+ A
Sbjct: 233 KKIGKAWKRGYLLFGPPGTGKSTMIAAMANFLEYDVYDLELTTVKDNTHLRRLLIETSAK 292
Query: 297 IRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVH---DTVVNQLLSKI 353
+ D + G D D + + N G + ++ LL+ I
Sbjct: 293 SIIVIEDIDCSLNLTGQRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLSGLLNFI 352
Query: 354 DGVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
DG+ +++ TN D +D AL+R GR++ +E+
Sbjct: 353 DGLWSACGGERIIVFTTNFVDKLDPALIRKGRMDKHIEM 391
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 34.7 bits (76), Expect = 0.27
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 251 ILLYGPPGTGKTLMARQIGKML-NAREPKIV 280
+LL GPPG GKT M R++ +ML N E +++
Sbjct: 200 LLLIGPPGVGKTTMIREVARMLGNDYEKRVM 230
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 33.9 bits (74), Expect = 0.47
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 534 VLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPE 566
VLL+GP +SGKT+L LA +S FV++ + E
Sbjct: 1075 VLLQGPTSSGKTSLVKYLAAISGNKFVRINNHE 1107
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 33.5 bits (73), Expect = 0.63
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREP-KIVNGPQILDKYVGESEA 295
+ IL+ G PGTGKT +A + K L P ++ G +I + ++EA
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEA 114
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 33.5 bits (73), Expect = 0.63
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 249 KGILLYGPPGTGKT----LMARQIG-KMLNAREPKIVNGPQILDKYVGESEANIRRL-FA 302
+G LLYGPPGTGK+ MA +G + + ++ N ++ + S +I +
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLGYDIYDLELTEVQNNSELRKLLMKTSSKSIIVIEDI 298
Query: 303 DAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQL--N 360
D + G N + ++ + G + V ++ LL+ DG+ +
Sbjct: 299 DCSISLTKRGKNKKKN-GSYEYDPGLTNGSGLEEPGSSV---TLSGLLNFTDGLWSCCGS 354
Query: 361 NILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMREYKKIAEDVD 420
+ + TN + +D AL+R GR+++ + +G + ++IL + R+ E ED+D
Sbjct: 355 EKIFVFTTNHIEKLDSALMRSGRMDMHVHMGF-CKFPALKILLKNYLRLEE-----EDMD 408
Query: 421 SMELATLTKNFSGAEL 436
S+ L + + AE+
Sbjct: 409 SVVLKEMEECVEEAEI 424
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 33.5 bits (73), Expect = 0.63
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLN----AREPKIVNGPQILDKYVGESEANIRRLFADA 304
+G LL+GPPGTGK+ M + L E V L K + +++ + D
Sbjct: 240 RGYLLFGPPGTGKSTMISAMANFLEYDVYDLELTTVKDNSELKKLMLDTKGKSIVVIEDI 299
Query: 305 EEEEKRCGANSGLHIIIFDEIDAICK--ARGSVGGNTGVHDTVV--NQLLSKIDGVDQL- 359
+ G DE + K A + G ++ V + LL+ IDG+
Sbjct: 300 DCSLDLTGQRKKKKEEDEDEEEEEKKKEAEKLLKRERGERESKVTLSGLLNAIDGLWSAC 359
Query: 360 -NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
+++ TN D +D AL+R GR++ +E+
Sbjct: 360 SGEKIIVFTTNYLDKLDPALIRRGRMDNHIEM 391
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 33.5 bits (73), Expect = 0.63
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 241 EQLGCKHVKGILLYGPPGTGKTLMARQIGKMLN----AREPKIVNGPQILDKYVGESEAN 296
+++G +G LL+GPPGTGK+ M I L+ E V L K + ++ +
Sbjct: 236 KKVGKPWKRGYLLFGPPGTGKSTMIAAIANFLDYDVYDLELTTVKDNSELKKLLLDTTSK 295
Query: 297 IRRLFADAEEEEKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVV--NQLLSKID 354
+ D + G +E D K G + V + LL+ ID
Sbjct: 296 SIIVIEDIDCSLDLTGQRKKKK-EEDEEEDGEEKKEGEKKPKVDDKQSKVTLSGLLNSID 354
Query: 355 GVDQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEI 390
G+ +++ TN D +D AL+R GR++ +E+
Sbjct: 355 GLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHIEM 392
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 33.1 bits (72), Expect = 0.83
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 243 LGCKHVKGILLYGPPGTGKTL 263
LGCK +++GPPGTGKT+
Sbjct: 409 LGCKGAPPYVIHGPPGTGKTM 429
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 238 EVVEQLGCKHVKGILLYGPPGTGKTLMARQIGKML 272
E +++G +G LLYGPPGTGK+ + + L
Sbjct: 243 EFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 277
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 32.3 bits (70), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREP-KIVNGPQILDKYVGESEA 295
+ IL+ G PGTGK +A I K L P ++ G +I + ++EA
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEA 114
>At1g66880.1 68414.m07601 serine/threonine protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 1296
Score = 32.3 bits (70), Expect = 1.4
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 415 IAEDVDSMELATLTKNFSGAELEGL-VRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERT 473
+ E + S E +T++ L + V Q+ A++ L+ +S + DPE K+M
Sbjct: 1157 LTELISSKEAVDITRHRHDINLANMAVSKIQNNALHELVDSSLGYDNDPEVRRKMMAVAE 1216
Query: 474 DFLHAL--ENDIKPAFGTSAEAL 494
L E D++PA E L
Sbjct: 1217 LAFRCLQQERDVRPAMDEIVEIL 1239
>At1g29150.1 68414.m03567 26S proteasome regulatory subunit,
putative (RPN6) similar to 19S proteosome subunit 9
GB:AAC34120 GI:3450889 from [Arabidopsis thaliana]
Length = 419
Score = 32.3 bits (70), Expect = 1.4
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 350 LSKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRM 409
++KI G L L M LR R+E ++ L + K V+ L + + +
Sbjct: 93 VAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ-RVEARLAALLMENKEYVEALALLSTLV 151
Query: 410 REYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLM 469
+E +++ + + +++ L + L L +A A+ A++ + V P A + +
Sbjct: 152 KEVRRLDDKLLLVDIDLLESKLHFS-LRNLPKA--KAALTAARTAANAIYVPP-AQQGTI 207
Query: 470 VERTDFLHALENDIKPAFGTSAEALEHFLARG 501
++ LHA E D K + EA E F A G
Sbjct: 208 DLQSGILHAEEKDYKTGYSYFFEAFESFNALG 239
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 245 CKHVKGI-LLYGPPGTGKT-LMARQIGKMLNAREPKIVNGP 283
CKH + + L++GPPGTGKT +A + ++ + +V P
Sbjct: 261 CKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAP 301
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1243
Score = 31.9 bits (69), Expect = 1.9
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 442 AAQSTAMNRLIKASS--KVEVDPEAMEKLMVERTDFLHALENDIKPAF 487
AA+ + ++I AS K+E DP A L+++ +ALE+DIK F
Sbjct: 799 AARENILMQIINASQMIKLEKDPHAAFALIIDGKTLTYALEDDIKYQF 846
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 31.9 bits (69), Expect = 1.9
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 15/194 (7%)
Query: 244 GCKHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFAD 303
G K I L GP G GKT + R I + L+ + + G + D V E + + R
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFSVG-GLSD--VAEIKGHRRTYIGA 501
Query: 304 AEEEEKRCGANSGLH--IIIFDEIDAICKARGSVGGNTGV------HDTVVNQLLSKIDG 355
+ +C N G +++ DEID + RG G + N L +D
Sbjct: 502 MPGKMVQCLKNVGTENPLVLIDEIDKL-GVRGHHGDPASAMLELLDPEQNANFLDHYLDV 560
Query: 356 VDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIG-LPDEKGRVQILNIHTKRMREYKK 414
L+ +L + N D I LL R+EV G + DEK + + R+
Sbjct: 561 PIDLSKVLFVCTANVTDTIPGPLL--DRMEVITLSGYITDEKMHIARDYLEKTARRDCGI 618
Query: 415 IAEDVDSMELATLT 428
E VD + A L+
Sbjct: 619 KPEQVDVSDAAFLS 632
>At1g75490.1 68414.m08770 DRE-binding transcription factor, putative
similar to DREB2A GB:BAA33794 GI:3738230 from
[Arabidopsis thaliana] (Plant Cell 10 (8), 1391-1406
(1998))
Length = 197
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 724 IPEIVIPQP-TAPAHATLLVRTENVTSRTDNLAMSP-SFSEMADSGRYTEEASSSHIDI 780
+PE + P TA + A+ + N ++ + + SP S +EM+ GR TEE S HI++
Sbjct: 88 LPESLRSYPKTASSPASQTTPSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINV 146
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 232 SRVFPPEVVEQLGCKHVKGILLYGPPGTGKTLM 264
SR F ++ Q VKG+ LYG GTGKT++
Sbjct: 145 SRWFWSRLMPQTSYSPVKGLYLYGGVGTGKTML 177
>At4g05340.1 68417.m00816 hypothetical protein
Length = 96
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 349 LLSKIDGV--DQLNNILVIGMTNRRDMIDEALLRPGRLEVQM 388
LL +DG+ + + ++I TN ++ +D A LRPG+++V +
Sbjct: 32 LLYFVDGLWSNSVEERIIIFTTNHKEKLDPAFLRPGKMDVHI 73
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 31.1 bits (67), Expect = 3.3
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 239 VVEQLGCKHVKGILLYGPPGTGKTLMARQIGKMLNARE-PKIVNGPQIL----------D 287
VV+ LG + L G PG GKT +A + + + + + P+ + G +++
Sbjct: 286 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGT 345
Query: 288 KYVGESEANIRRLFADAEEEEK 309
KY GE E +++L + + ++
Sbjct: 346 KYRGEFEERLKKLMEEIRQSDE 367
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 31.1 bits (67), Expect = 3.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 240 VEQLGCKHVKGI-LLYGPPGTGKT-LMARQIGKMLNAREPKIVNGP 283
+E C H + L++GPPGTGKT +A + +L R +V P
Sbjct: 233 LETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKLRCKTVVCAP 278
>At5g22370.1 68418.m02610 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 291
Score = 31.1 bits (67), Expect = 3.3
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 248 VKGILLYGPPGTGKTLMARQIGKMLN--AREPKIVNGPQILDKYVGESEANIRRLF-ADA 304
V G ++ GPPG+GKT + + L+ R+ IVN D E NI L +
Sbjct: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLMGRKVAIVNLDPANDALPYECGVNIEELIKLED 61
Query: 305 EEEEKRCGANSGL 317
E G N GL
Sbjct: 62 VMSEHSLGPNGGL 74
>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1228
Score = 31.1 bits (67), Expect = 3.3
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 441 RAAQSTAMNRLIKASS--KVEVDPEAMEKLMVERTDFLHALENDIKPAF 487
R + +N+L KA K+E DP A L+++ +ALE+D+K F
Sbjct: 791 RVVKENILNQLTKAVQMVKLEKDPHAAFALIIDGKTLTYALEDDMKYQF 839
>At1g66510.3 68414.m07557 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 355
Score = 31.1 bits (67), Expect = 3.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 80 KPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQVFTVGQQLAFLFQEKK 139
K S + L S+ L+ +++ S + DSE + L QF+ F +GQ L Q K
Sbjct: 160 KGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGEL-QFSFVAFLMGQSLESFMQWKS 218
Query: 140 VLSLIV 145
++SL++
Sbjct: 219 IVSLLL 224
>At1g66510.2 68414.m07556 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 399
Score = 31.1 bits (67), Expect = 3.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 80 KPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQVFTVGQQLAFLFQEKK 139
K S + L S+ L+ +++ S + DSE + L QF+ F +GQ L Q K
Sbjct: 204 KGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGEL-QFSFVAFLMGQSLESFMQWKS 262
Query: 140 VLSLIV 145
++SL++
Sbjct: 263 IVSLLL 268
>At1g66510.1 68414.m07555 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 399
Score = 31.1 bits (67), Expect = 3.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 80 KPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQVFTVGQQLAFLFQEKK 139
K S + L S+ L+ +++ S + DSE + L QF+ F +GQ L Q K
Sbjct: 204 KGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGEL-QFSFVAFLMGQSLESFMQWKS 262
Query: 140 VLSLIV 145
++SL++
Sbjct: 263 IVSLLL 268
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 31.1 bits (67), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 525 ATEASGLVSVLLEGPPNSGKTALAAQLAKLSDFP 558
A E++ L S++ GPP +GKT++A L S P
Sbjct: 131 AVESNRLPSIVFWGPPGTGKTSIAKSLINSSKDP 164
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 251 ILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKR 310
I+ +GPPGTGKT +A+ + + ++++P + + V ++R DA E KR
Sbjct: 140 IVFWGPPGTGKTSIAKSL--INSSKDPSLYRFVSL--SAVTSGVKDVR----DAVESAKR 191
Query: 311 CGANSGLHIIIF-DEIDAICKAR 332
++F DE+ K++
Sbjct: 192 LNLEGRKRTVLFMDEVHRFNKSQ 214
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 30.7 bits (66), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 240 VEQLGCKHVKGI-LLYGPPGTGKT 262
+E C H I L++GPPGTGKT
Sbjct: 279 LEAKSCNHSNNIKLIWGPPGTGKT 302
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 30.7 bits (66), Expect = 4.4
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 372 DMIDEALLRPGRLEVQMEIGLPDEKGRVQILNIHTKRMR--EYKKIAEDVDSME-LATLT 428
D I+ + + +EV++ + + Q+L ++ E K + E E +AT
Sbjct: 356 DEIESLMEKMSNIEVKLRLSNQKLRVTEQVLTEKEGELKRIEAKHLEEQALLEEKIATTH 415
Query: 429 KNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAMEKLMVERTDFL 476
+ + G ++ + ST +NR S K+E ++ EK +VE T L
Sbjct: 416 ETYRGL-IKEISERVDSTILNRFQSLSEKLEEKHKSYEKTVVEATKML 462
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 30.7 bits (66), Expect = 4.4
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 245 CKHVKGILLYGPPGTGKTLMARQIGKML 272
C H+ L YGPPGTGKT A I L
Sbjct: 30 CPHM---LFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 30.7 bits (66), Expect = 4.4
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 245 CKHVKGILLYGPPGTGKTLMARQIGKML 272
C H+ L YGPPGTGKT A I L
Sbjct: 42 CPHM---LFYGPPGTGKTTTALAIAHQL 66
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 30.3 bits (65), Expect = 5.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 521 QQARATEASGLVSVLLEGPPNSGKTALAAQLAKLSDFPFVKVCSPEDMVGFTET-AKCLQ 579
+ A +A +V VLL GPP SGK+ + S P+ ++C G T A+CL+
Sbjct: 218 ESIEADKAKQIV-VLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLK 276
Query: 580 I 580
+
Sbjct: 277 M 277
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 30.3 bits (65), Expect = 5.8
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 280 VNGPQILDKYVGESEANIRRLFADAEE----EEKRCGANSGLHIIIFDEIDAICKARGSV 335
V+ Q+L+ + ES+ R L D E+ +EK N + D + C +
Sbjct: 2101 VSHAQMLEVRLQESKEITRNLEVDTEKARKCQEKLSAENKDIRAEAEDLLAEKCSLEEEM 2160
Query: 336 GGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMTNRRDMIDEA-LLRPGRLEVQMEIG-LP 393
V +++ +L + + + QLN+ + D IDE L+ L ++ E G +
Sbjct: 2161 IQTKKVSESMEMELFNLRNALGQLNDTVAFTQRKLNDAIDERDNLQDEVLNLKEEFGKMK 2220
Query: 394 DEKGRVQILNIHTKRMREYKKIAEDVDSMELATL 427
E ++ I +++ E +K D E+ L
Sbjct: 2221 SEAKEMEARYIEAQQIAESRKTYADEREEEVKLL 2254
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 30.3 bits (65), Expect = 5.8
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 242 QLGCKHVKGI-LLYGPPGTGKTLMARQIG-KMLNAREPKIVNGPQILDKYVGESEANIRR 299
Q+ C+ K ++ G PG GKT +A + +++ P+ + +++ +G A +
Sbjct: 273 QILCRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAG-AK 331
Query: 300 LFADAEEE----EKRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDG 355
D EE K A++G I+ DEI + A G G D + LL + G
Sbjct: 332 FRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGA----GAMDGAMD--ASNLLKPMLG 385
Query: 356 VDQLNNILVIGMTNRRDMIDE 376
+L I +T R I++
Sbjct: 386 RGELRCIGATTLTEYRKYIEK 406
>At2g17110.1 68415.m01974 expressed protein
Length = 733
Score = 30.3 bits (65), Expect = 5.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 759 SFSEMADSGRYTEEASSSHIDIVAMSYEDALLSNSFDVINLEELPAATRSYDSDSSLKPE 818
SF E A RY S +H+ SY +L + S + DS KP+
Sbjct: 22 SFLEAAIHQRYA--LSEAHV-----SYTQSLKAISHSLHQFINHHHRYNDSDSPKKAKPK 74
Query: 819 TPRLLEYIDSNSDSSDTETCDLDSRTHPLTPLNFILSDDD 858
++D +SDS + D+DS H +PL+ L DDD
Sbjct: 75 MDSGSGHLDFDSDSDSDDDDDIDS-LHS-SPLHHHLEDDD 112
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 407 KRMREYKKIAEDVDSMELATLTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEVDPEAME 466
K++ + K AED ++ A+ + EL + ST +RL++A ++E A E
Sbjct: 488 KKLEQATKEAEDAKALATASRDELRMAKELSEQAKRGMSTIESRLVEAKKEMEA-ARASE 546
Query: 467 KLMVERTDFLHALEN 481
KL + L E+
Sbjct: 547 KLALAAIKALQETES 561
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 251 ILLYGPPGTGKTLMARQIGKML 272
IL+ G PG GKT + R+I +ML
Sbjct: 216 ILVIGSPGVGKTTLIREIARML 237
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 251 ILLYGPPGTGKTLMARQIGKML 272
IL+ G PG GKT + R+I +ML
Sbjct: 216 ILVIGSPGVGKTTLIREIARML 237
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 245 CKHVKGI-LLYGPPGTGKT-LMARQIGKMLNAREPKIVNGP 283
C H + L++GPPGTGKT + + +LNA+ + GP
Sbjct: 255 CYHANTVRLIWGPPGTGKTKTTSVLLFTLLNAKCRTLTCGP 295
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.9 bits (64), Expect = 7.7
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 249 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEE 308
K +LL G PG GKT +A K R +I + S + I D +
Sbjct: 346 KILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDE-------RSASAIETRILDVVQMN 398
Query: 309 KRCGANSGLHIIIFDEIDAICKARGSVGGNTGVHDTVVNQLLSKIDGVDQLNNILVIGMT 368
A+S ++ DEID G++G G D ++ +L++ N+ + +
Sbjct: 399 S-VTADSRPKCLVIDEID------GALGDGKGAVDVILKMVLAERKHATGKENVENVKTS 451
Query: 369 NRRDMIDEALLRP 381
+++D L RP
Sbjct: 452 SKKDRRTAPLSRP 464
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,990
Number of Sequences: 28952
Number of extensions: 827223
Number of successful extensions: 2884
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2430
Number of HSP's gapped (non-prelim): 305
length of query: 878
length of database: 12,070,560
effective HSP length: 87
effective length of query: 791
effective length of database: 9,551,736
effective search space: 7555423176
effective search space used: 7555423176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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