Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000446-TA|BGIBMGA000446-PA|undefined
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 45 2e-05
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 35 0.031
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 34 0.041
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 33 0.13
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 31 0.29
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 30 0.67
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 30 0.67
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 29 2.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 29 2.1
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 2.1
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 2.7
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 28 2.7
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 28 3.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 3.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.7
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 4.7
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.7
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 27 4.7
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 6.3
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 8.3
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 27 8.3
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 8.3
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 45.2 bits (102), Expect = 2e-05
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Query: 5 EILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVTYT-PRLL 63
EILT+ FG SN+ HFWN QE F Y +N + +R + E T PR
Sbjct: 3 EILTVTFGRKSNFCWTHFWNTQESYFVYDPNDHAKVNVNTNFRVLKKRDPEAIVTVPREC 62
Query: 64 IADLKGALKTLPQS--GGLSDDAQETDLQWD-TVEKIEEPPPEKNQYLAAIDSVQTTVAD 120
I D ++ L++ + WD + +I + P + + Y A+ S + + +
Sbjct: 63 IYDTPIEFGNTRKNWLEELNESSGGKGTAWDGKLTQIMQTPVDVHPYQEALWS-RDEIHE 121
Query: 121 GKKDYNLEENEAFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINF 172
G + E E I P W SD+ LF D + C + +F
Sbjct: 122 GNAIES--EYELPSIRPKSVKYW-SDFNRLFLDTEYLFPVNCSELNSSDFSF 170
Score = 43.6 bits (98), Expect = 7e-05
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 149 DLFSDNIRKYVEECDSMQGFQINFDCTDGFAGLALGCIEHLSDEYTKPILAYPIIASHFP 208
+++ + +R VEECDS+QGFQ D + G A ++ + DE + + + P
Sbjct: 185 NVWDEGLRPLVEECDSVQGFQAAIDIDTPWGGFASEYMKVVQDELGECRVPTWVYGIREP 244
Query: 209 DNNSNTQEERDISNLRDSIRLVNILLSIQELSEHATMYVPLCTGEKG 255
+ ++ + + + +N LS+ +L+ + Y PLCT +G
Sbjct: 245 IQSDSS------ATIDNHFGKLNEALSLSQLNGSCSQYFPLCTISQG 285
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 34.7 bits (76), Expect = 0.031
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 129 ENEAFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDCTDGF-AGLALGCIE 187
++ A +I+ G ++ D D +R+ E CD++QGFQ+ G +G+ +
Sbjct: 94 QSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLS 153
Query: 188 HLSDEYTKPILA 199
+ +EY ++A
Sbjct: 154 KIREEYPDRMMA 165
Score = 32.7 bits (71), Expect = 0.13
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 4 REILTLQFGHYSNYVGAHFWN--IQELSFDYSGT--ATTDLNHD---ILYREGQTSRNEV 56
REI+ +Q G N VGA FW+ E D +G T++ H+ + + E +
Sbjct: 2 REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK--- 58
Query: 57 TYTPRLLIADLKGALKTLPQSG 78
Y PR ++ DL+ +SG
Sbjct: 59 -YVPRAVLVDLEPGTMDAVKSG 79
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 34.3 bits (75), Expect = 0.041
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 129 ENEAFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDCTDGFAGLALGC--I 186
+ +A + Y G + D +D IR+ + C +QGF + F G G G +
Sbjct: 96 KEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLV-FHSFGGGTGSGFGALLL 154
Query: 187 EHLSDEYTK 195
E L+ EYTK
Sbjct: 155 ERLAMEYTK 163
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 512
D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 32.7 bits (71), Expect = 0.13
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 4 REILTLQFGHYSNYVGAHFWNIQELSFDY----SGT----ATTDLNH-DILYREGQTSRN 54
REI+TLQ G N +G+ FW Q+L ++ GT AT ++ D+ + + +R
Sbjct: 3 REIITLQAGQCGNQIGSQFW--QQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTR- 59
Query: 55 EVTYTPRLLIADLK 68
Y PR ++ DL+
Sbjct: 60 ---YIPRAILIDLE 70
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 31.5 bits (68), Expect = 0.29
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 170 INFDCTDGFA-GLALGCIEHLSDEYTKPILAYPIIASHFPDNNSNTQEERDISN 222
IN F+ GL L +E T+PI A P + +H P++ +N +EE D ++
Sbjct: 370 INLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTNHSPNDLTNGEEEMDTTS 423
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 30.3 bits (65), Expect = 0.67
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 378 KEAKAQQNLPAYRCNSVKEMFELYFQANNFLSATNLTVNEQPLNLKTPFPQIFTKNLNKY 437
+E AQQ + E+ + L +N+ +N+ ++T ++ +N
Sbjct: 398 QEQLAQQQFQMQTQGQLAELEQQLLATRGQLEQSNVLLNQYDARVRTLENELSQAGVNLQ 457
Query: 438 GFI-KNDNRLEDVESCAVIAGYHNGTFLANMIEKLYRDVSRIRFAKLHKFKEEGLEASEY 496
I +ND+ +E +++ ++ + LA KLY + + L K+K+ L+AS
Sbjct: 458 EQIHQNDDLIESLKN-QILTWKNKYEALA----KLYTQLRQEHLDLLSKYKQIQLKASSA 512
Query: 497 TESLDK 502
E++DK
Sbjct: 513 QEAIDK 518
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 30.3 bits (65), Expect = 0.67
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 129 ENEAFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDCTDGFAGLALGC--I 186
+ +A + Y G + D + IR+ + C +QGF + F G G LG +
Sbjct: 100 KEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLV-FHSFGGGTGSGLGALLL 158
Query: 187 EHLSDEYTK 195
E L+ EY K
Sbjct: 159 ERLNMEYGK 167
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 512
D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 125 YNLEENEAFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDC 174
+NLE+ + GR K + DLF D +++ + C + + I + C
Sbjct: 323 FNLEKTKPSCTTTVGRVTLKDQWDDLFIDELKRALRACKTFLFYPIYWVC 372
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 91 WDTVEKIEEPPPEKNQ-YLAAIDSVQTTVADGKKDYNLEENEAFDIYPTGRGVWKSDYGD 149
+D V+++ P +K+Q Y A+D + K Y E N+ P+G +
Sbjct: 547 YDVVQQVLNAPMDKDQNYALAVDMFKQGKITEKIVYGQELNDKKVAKPSGFRAGYMGHLT 606
Query: 150 LFSDNIRKYVEECDS 164
+ +D + K+VE S
Sbjct: 607 IIADEVVKFVEHYSS 621
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.7 bits (61), Expect = 2.1
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 178 FAGLALGCIEHLSDEYTKPILAYPIIASHFPDNNSNTQEERDISNLRDSIRLVNILLSIQ 237
F L ++++S+ ++P+ PD +S + +D+ L++ I+ NI +
Sbjct: 190 FQSAMLPMLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNI-TEVD 248
Query: 238 ELSEHATMYVPLCTGEKGWRKPGNARTF---DCLNYDPKLY 275
EL C G P NA + +C Y +L+
Sbjct: 249 ELYREVLRIFANCKMYNG-SDPANAMSIWGDECFRYTEELF 288
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 464 LANMIEKLYRDVSRIRFAKLHKFKEEGLEASEYTESLDK 502
++N + ++D +R F +++ +E G E + Y +L K
Sbjct: 986 ISNSVSSSFKDFTRTPFKEINGERETGFELTSYVNALSK 1024
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 405 NNFLSATNLTVNEQPLNLKTPFPQIFTK 432
N+ LS+ N+ + QP+ ++ P P+I K
Sbjct: 393 NSLLSSQNVEASSQPIKIRKPLPEIPNK 420
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 354 IANDKLFQLITI----RGIPESYLKAPPKEAKAQQNLPAYRCNSVK 395
+AN L++LITI R + +SYLKA A+Q A + S K
Sbjct: 1 MANSGLWELITIGSAVRNVAKSYLKAEASSITAKQLYDASKITSSK 46
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 80 LSDDAQ-ETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADG--KKDYNLEE 129
+SDD + ++Q D E +PPPE +L + ++ +G KD +LE+
Sbjct: 4055 MSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLED 4107
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 209 DNNSNTQEERDISNLRDSIRLVNILLSI--QELSEHATMYVPL 249
D NS E RD L D++ + N+L QEL H + PL
Sbjct: 261 DKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPL 303
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 191 DEYTKPILAYPIIASHFPDNNSNTQEERDISNLRDSIRLVNILLSIQELSEHATMYVPLC 250
+E ++ I P+ H P+ + + EE + S+ + R V ++ + + +Y+ C
Sbjct: 13 EEESEKIQKSPVDTPHTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQ-C 71
Query: 251 TGEKGWRKPGNARTFDCLNYDPKLYY 276
W+ GN F + P++YY
Sbjct: 72 DQCSVWQH-GNCVGFADESEVPEVYY 96
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 73 TLPQSGGLSDDAQETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADGKK 123
+L ++ DD+ D W T+E PP ++ L A+DS T+ K+
Sbjct: 133 SLSETSNALDDSCFND-DWITIESEFSPPIDRGMTLEAMDSQNDTLFTSKQ 182
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 4.7
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 375 APPKEAKAQQNLPAYRCNSVKEMFELYFQANNFLSATN-----LTVNEQPLNLKTPFPQI 429
+P + A+ + P R S K ++Y A +T LT+ E P+NL P +I
Sbjct: 85 SPIRRGGAKSHGPKPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTRI 144
Query: 430 FTKNL------NKYG---FIKNDNRLED 448
+ L ++YG F+ NDN ED
Sbjct: 145 LLEVLKQHKLGHEYGKALFVLNDNYFED 172
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 165 MQGFQINFDCTDGFAGLALGCIEHLSDEYTKPILAYPIIASHFPDNNSNTQEERDISNLR 224
M+G + + G A LA+ I +++ ++AY + HFP + NT ++
Sbjct: 470 MRGITVGVIGSSGSAQLAIFFILEVAN-----VVAYAYVRPHFPQTSMNT-----LNTFI 519
Query: 225 DSIRLVNILLSI 236
++RL+ ++L I
Sbjct: 520 STMRLITVILMI 531
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 363 ITIRGIPESYLKAPPKEAKAQQNLPAYRCNSVKEMFEL 400
I + +P+S+LK P++ QN S++E E+
Sbjct: 72 ILLSWVPDSFLKNRPRDLSVFQNAETLSNGSIREWVEI 109
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 432 KNLNKYGFIKNDNRLEDVESCAVIAGYHNGTFLANMIEK 470
KNL+ YG NRL+DV++ IA + F AN I++
Sbjct: 374 KNLDDYG---EGNRLDDVDAEDKIARKRSLKFYANQIDQ 409
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 386 LPAYRCNSVKEMFELYFQANNFLSATNLTVNEQPLN 421
L Y+C+ KE F Q+ +TNL ++ PL+
Sbjct: 359 LCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLH 394
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,650
Number of Sequences: 5004
Number of extensions: 115985
Number of successful extensions: 374
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 30
length of query: 516
length of database: 2,362,478
effective HSP length: 76
effective length of query: 440
effective length of database: 1,982,174
effective search space: 872156560
effective search space used: 872156560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -