Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000445-TA|BGIBMGA000445-PA|IPR001766|Fork head
transcription factor
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    33   0.33 
At5g06120.1 68418.m00680 Ran-binding protein, putative similar t...    31   1.00 
At1g11580.1 68414.m01329 pectin methylesterase, putative similar...    30   2.3  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    29   5.3  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    29   5.3  
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    29   7.0  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    29   7.0  
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain...    28   9.3  

>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 94  IDNSSLSNGRQLMKTSISNTYTVD---NSQTKYLSAHGKTVGEFPKPAYSY 141
           ID +SL  G QL+K    +T +VD   N QT YL+    TV    + A  Y
Sbjct: 197 IDQASLLRGEQLLKMQSLHTSSVDAGVNRQTDYLTERSSTVRHSDQEAMHY 247


>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
           SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
           contains Pfam profile PF03810: Importin-beta N-terminal
           domain
          Length = 1066

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 26  DLYITDSLQDMLDIDIKNEIATDLSSISDFQIGTKTIISGNIHILDAQSIGQSRTILANG 85
           +LY   +L D LDI +K  +A  L+ I  ++  TK    G + +L A  I    T +   
Sbjct: 845 ELYGDRALADALDIALKMTLAIPLADILAYRKLTKAYF-GFVEVLCASHI----TFIL-- 897

Query: 86  NKNQATILIDNSSLSNGRQLMKTSISN--TYTVDNSQTKYLSAHGKTVGEFP 135
             + AT +    SL +G + + TSIS+     VDN  + Y   +  T+GE P
Sbjct: 898 KLDTATFMHLVGSLESGLKGLDTSISSQCAIAVDNLASYYF--NNITMGEAP 947


>At1g11580.1 68414.m01329 pectin methylesterase, putative similar to
           pectin methylesterase GI:1617583 from [Lycopersicon
           esculentum]
          Length = 557

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 61  TIISGNIHILDAQSIGQSRTILANGNKNQA-TILIDNSSLSNGRQLMKTSISNTYTVDN 118
           TII+G+++++D  +  +S T+ ANG+   A  I   N++     Q +   +S   TV N
Sbjct: 307 TIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVIN 365


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 167  CQHFPYFKTAPNGWKNSVRHNLSLNKCFEKIEK 199
            C+HF + +  PN WK  +R N S+    + +E+
Sbjct: 1192 CEHFLFDEKPPNLWKEDLRKNKSIIAFKDLVER 1224


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 11/57 (19%)

Query: 223 DEEVQKWSRKDPQAIKKAMVYPESLEALERGEMKYSAVGGDTDIEDDADVDGDTEMD 279
           +EE+++   KDP   +    +   L       +K+ A    T+IEDDADV+ DT+++
Sbjct: 75  EEELKRLQEKDPDFFQYMKEHDAEL-------LKFDA----TEIEDDADVEPDTDLE 120


>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 118 NSQTKYLSAHGKTVGEFPKPAYSYSCLIAMAL-KNSRTGSLP 158
           +S  ++ + + +  GEFPK   S S LI++ L +N  TG LP
Sbjct: 472 SSLVEFKAGNNQFSGEFPKELTSLSNLISIFLDENDLTGELP 513



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 123 YLSAHGKTVGEFPKPAYSYSCLIAMALKNSRTGSLPVS 160
           YL A+G T GE PK   + + +      N+ TGS+PVS
Sbjct: 265 YLFANGLT-GEIPKSISATNLVFLDLSANNLTGSIPVS 301


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 220 GKMDEEVQKWSRKDPQAIKKAMVYPESLEALERGEMKYS 258
           GK +EEV+++++   +  K+   Y   ++ +ERGE + S
Sbjct: 873 GKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARIS 911


>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 268

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 173 FKTAPNGWKNSVRHNLS-LNKCFEKIEK 199
           F++ PNGWK  +++ L+ +N+  EK+ +
Sbjct: 62  FQSLPNGWKRHIKYRLTVVNQMSEKLSE 89


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,244,799
Number of Sequences: 28952
Number of extensions: 329776
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 10
length of query: 390
length of database: 12,070,560
effective HSP length: 82
effective length of query: 308
effective length of database: 9,696,496
effective search space: 2986520768
effective search space used: 2986520768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)