GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000445-TA|BGIBMGA000445-PA|IPR001766|Fork head
transcription factor
         (390 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    86   4e-19
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    81   1e-17
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   6.5  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   8.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   8.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   8.6  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 86.2 bits (204), Expect = 4e-19
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 136 KPAYSYSCLIAMALKNSRTGSLPVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFE 195
           KP YSY+ LI MA++NS    L ++ IY ++ ++FPY++    GW+NS+RHNLSLNKCF 
Sbjct: 83  KPPYSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFV 142

Query: 196 KIEKPSTNGSQRKGCLWAMNPS 217
           K+  P       KG  W ++PS
Sbjct: 143 KV--PRHYDDPGKGNYWMLDPS 162


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 81.0 bits (191), Expect = 1e-17
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 136 KPAYSYSCLIAMALKNSRTGSLPVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFE 195
           KP YSY  LI MA++NS    L +SEIY F+   FP+++     W+NS+RH+LS N CF 
Sbjct: 140 KPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 199

Query: 196 KIEKPSTNGSQRKGCLWAMNPSKVGKMDE 224
           K+  P T     KG  W+++P   G M E
Sbjct: 200 KV--PRTPDKPGKGSFWSLHPDS-GNMFE 225


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 32 SLQDMLDIDIKNEIAT 47
          +LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 32 SLQDMLDIDIKNEIAT 47
          +LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 32 SLQDMLDIDIKNEIAT 47
          +LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 149 LKNSRTGSLPVSEIYNFMCQHF 170
           LKN+    LP  ++ + +CQ F
Sbjct: 18  LKNAEFNGLPEEKLLDALCQSF 39


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 354 NSYEEVDFGKPIKFDLMTENYTK 376
           N Y+ VD  K +  D +  NY K
Sbjct: 25  NKYDNVDVDKILNNDRVLTNYIK 47


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 223 DEEVQKWSRKDPQAIKKAMVYPESLEALERGE 254
           DE   KW + D    K    Y    + +E+G+
Sbjct: 223 DEPDHKWKKNDSSKKKTRYYYRSVDDVIEKGK 254


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 186 HNLSLNKCFEKIEK 199
           H LS+N  +EKI+K
Sbjct: 268 HTLSMNHKYEKIDK 281


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,611
Number of Sequences: 317
Number of extensions: 3248
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 114,650
effective HSP length: 58
effective length of query: 332
effective length of database: 96,264
effective search space: 31959648
effective search space used: 31959648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)