GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000445-TA|BGIBMGA000445-PA|IPR001766|Fork head
transcription factor
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    93   8e-20
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    81   3e-16
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    75   1e-14
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    64   2e-11
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.1  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   1.5  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    29   1.5  
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha...    28   2.0  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    28   2.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   4.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   4.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   6.0  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   7.9  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 92.7 bits (220), Expect = 8e-20
 Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 8/121 (6%)

Query: 132 GEFPKPAYSYSCLIAMALKNSRTGSLPVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLN 191
           G+  KP YSYS +IA A+ +S    + +S IY+++  H+PY++T  +GW+NS+RHNLSLN
Sbjct: 219 GDNKKPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLN 278

Query: 192 KCFEKIEKPSTNGSQRKGCLWAMNPSKVGKMDEEVQKWSRKDPQAIKKAMVYPESLEALE 251
           K F K+  P  +G Q KG  W++ P    +  EE    +RK P+  K++   P  L A +
Sbjct: 279 KAFRKV--PRKSGEQGKGMKWSIVP----EFREEFIAKTRKTPR--KRSPSSPVPLLAKK 330

Query: 252 R 252
           R
Sbjct: 331 R 331


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 104 QLMKTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLIAMALKNSRTGSLPVSEIY 163
           Q + T I    +V +SQ++        + +  KP YSY+ LI M++  S    L +S IY
Sbjct: 96  QSLDTIIYRNPSVSSSQSQEPEEFFLPLDDGKKPPYSYAMLIGMSIIRSPDRRLTLSAIY 155

Query: 164 NFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFEKIEKPSTNGSQRKGCLWAMNP 216
           +++   F ++  + NGW+NS+RHNLSLNK F KIE+P       KG  W++ P
Sbjct: 156 DWISNTFSFYNKSNNGWQNSIRHNLSLNKAFMKIERP--RNLPGKGHFWSIRP 206


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 136 KPAYSYSCLIAMALKNSRTGSLPVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFE 195
           KP  SY+ LI +A+  S    L +S IY ++   F Y+     GW+NS+RHNLSLNK F 
Sbjct: 81  KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140

Query: 196 KIEKPSTNGSQRKGCLWAMNP 216
           K+EKP   G   KG  W ++P
Sbjct: 141 KVEKP--KGKTLKGHYWTIDP 159


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 136 KPAYSYSCLIAMALKNSRTGSLPVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFE 195
           KP  SY+ LIA  L  +    + + +I  ++  ++ Y++  P  W NS+RHNLSLNK F 
Sbjct: 291 KPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSLNKAFI 350

Query: 196 KIEKPSTNGSQRKGCLWAMNPSKVGKMDEEVQKWSRKDPQAIKKAMVYPESLEALERGEM 255
           +I  P       KG  W ++PS + + +    + ++K P        +P++    E   +
Sbjct: 351 RI--PRRQNEPGKGSFWMLDPSYIDQFEGNFFRRTKK-PTPSATPAAHPDTARENELAAI 407

Query: 256 KYSAV-GGDTD 265
           +   +  G T+
Sbjct: 408 QTKGISAGKTE 418


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 50   SSISDFQIGTKT-IISGNIHILDAQSIGQSRTILANGNKNQATILIDNSSLSNGRQLMKT 108
            SSI D ++ T + + S ++     QS   S    +N N   +T+L  +S+++N      T
Sbjct: 3787 SSIRDAELPTPSRMTSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNSFTTAST 3846

Query: 109  SISNTYTVDNSQTKYLSAHGKTV 131
            SI  T +++++  K+ ++  ++V
Sbjct: 3847 SIMKTTSLNSNSYKWYNSTTQSV 3869


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 158 PVSEIYNFMCQHFPYFKTAPNGWKNSVRHNLSLNKCFEKIEKPSTNGSQRKGCLWAM 214
           P  E+ + +CQHF   K +PN    S+   L++ K    + K         G LW++
Sbjct: 200 PTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSV 256


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 11/100 (11%)

Query: 6   QCTHKHISVPKEVISWCSDMDLYITDSLQDMLDIDIKNEIATDLSSI--SDFQIGTKT-- 61
           Q  H H+ V ++ +  C +++  ++ +L+ ++DI +K+ +A D +S+  S  Q  +K+  
Sbjct: 76  QVIHSHLPVLQKGLQECQNLNKSVSQNLKSVMDI-LKS-LAEDYTSLEGSPLQFASKSQQ 133

Query: 62  ----IISGNIHILDAQSIGQSRTILANGNKNQATILIDNS 97
               ++S    IL A       T  A+ + N+A+ L+D S
Sbjct: 134 KVEMMLSEGCQILGALCYNILETYAAS-SLNKASTLLDLS 172


>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 235 QAIKKAMVYPESLEA-LERGEMKYSAVGGDTDIEDDADVDGDTEMD 279
           QA ++A  Y ES  +  E G+    A G D D ED  D D D + D
Sbjct: 23  QAKERAEDYIESHSSGQETGDYSAQAGGRDLDYEDLGDYDEDADFD 68


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 217 SKVGKMDEEVQKWSRKDPQAIKKAMVYPESLEALER-GEMKYSAVGGDTDIEDDADV 272
           S+  K   E++K+  K  Q  K+     E  E LE+   +K    GGD   EDD D+
Sbjct: 198 SQQAKKQRELKKFG-KQVQLAKQEERQREKKETLEKINLLKRKHTGGDLTTEDDFDI 253


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 63  ISGNIHILDAQSIGQSRTILANGNKNQATILIDNSSLSNGRQLMKTSISNTYTVDNSQTK 122
           I  N H  D +++ +S    +N ++++ T   DN + S+    +++S S+    +NS +K
Sbjct: 165 IGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDSK 224


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 159 VSEIYNFMCQHFPYFKTAP 177
           + E    MCQH PYFK+ P
Sbjct: 124 IDENITDMCQHSPYFKSFP 142


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 92  ILIDNSSLSNGRQLMKTSISNTYTVDNSQTKYLSAHGKTVG 132
           +++DN+    G  L++        V +S TK++  HG T+G
Sbjct: 181 LMVDNT-FGGGGYLVRPIDHGADIVTHSATKWIGGHGTTIG 220


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 98  SLSNGRQLMKTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLI 145
           S+   R L+K      Y  D    +Y   +GK V E  KPA+  S L+
Sbjct: 419 SVDPDRMLVKKEDQTRYVPDVLY-RYTDKYGKQVSENAKPAFPVSFLL 465


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,127
Number of Sequences: 5004
Number of extensions: 65476
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 14
length of query: 390
length of database: 2,362,478
effective HSP length: 74
effective length of query: 316
effective length of database: 1,992,182
effective search space: 629529512
effective search space used: 629529512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)