Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000445-TA|BGIBMGA000445-PA|IPR001766|Fork head
transcription factor
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0145 + 7163922-7165604 37 0.032
02_02_0151 - 7220335-7220819,7220933-7223507 34 0.17
03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632... 33 0.52
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 30 2.8
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 30 2.8
11_06_0513 + 24466131-24469487 29 6.4
02_02_0146 - 7171656-7172044,7172383-7175008 29 6.4
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 29 8.4
03_06_0571 + 34804375-34804413,34804895-34804961,34806327-348065... 29 8.4
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 29 8.4
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 29 8.4
>02_02_0145 + 7163922-7165604
Length = 560
Score = 36.7 bits (81), Expect = 0.032
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 86 NKNQATILIDNSSLSNGRQLMKTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLI 145
NK I++ N+S S + T++ + T++N ++ + VG+FPK +S+ L
Sbjct: 380 NKKLFDIVVFNNSFSG---VFPTNLGDCKTINN----IMAYNNHFVGDFPKKIWSFELLT 432
Query: 146 AMALKNSRTGSLPVSEIYNFM 166
+ + N+ TG+LP +N +
Sbjct: 433 NVMIYNNFTGTLPSEISFNIL 453
>02_02_0151 - 7220335-7220819,7220933-7223507
Length = 1019
Score = 34.3 bits (75), Expect = 0.17
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 33 LQDMLDIDIKNEIATDLSSISDFQIGTKTIISGNIHILDAQSIGQSRTILANGNKNQATI 92
+ D+ DI + N LS ++G + + GN + + G+ L NK I
Sbjct: 327 MPDLTDIRLFNN---KLSGPLPAELGKHSEL-GNFEVSNNNLSGELPDTLCF-NKKLFDI 381
Query: 93 LIDNSSLSNGRQLMKTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLI-AMALKN 151
++ N+S S + T++ + T++N ++ + VG+FPK +S+ L M N
Sbjct: 382 VVFNNSFSG---VFPTNLGDCKTINN----IMAYNNHFVGDFPKKIWSFELLTNVMIYNN 434
Query: 152 SRTGSLPVSEI 162
+ TG+LP SEI
Sbjct: 435 NFTGTLP-SEI 444
>03_06_0486 -
34261577-34261692,34261830-34262094,34263164-34263277,
34263371-34264795
Length = 639
Score = 32.7 bits (71), Expect = 0.52
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 113 TYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLIAMALK 150
T + ++ YL K VGEFP+ A SC++AM +K
Sbjct: 380 TRALHRTEEAYLDIADKMVGEFPELALMGSCVLAMLMK 417
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 16 KEVISWCSDMDLYITDS-LQDMLDI 39
K V+SWCS M LYI D L++ L +
Sbjct: 204 KNVVSWCSMMQLYIRDGRLEEALQV 228
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 220 GKMDEEVQKWSRKDPQAIKKAMVYPESLEALERGEMKYS 258
GK +EEVQ++++ + K+ Y ++ +ERGE + S
Sbjct: 926 GKTEEEVQRYAKVFKERYKELSDYDRIIKNIERGEARIS 964
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 191 NKCFEKIEKPSTNGSQRKGCLWAMNPSKVGKMDEEVQKWSRKDPQAIKKAMVYPESLEAL 250
++CF+ + P +NG R+GC+ M + +R Q + KA+V S
Sbjct: 507 SECFDLVNNPGSNGGIRRGCM----------MHRVLHILARHKGQELYKAIVGDHSAALK 556
Query: 251 ERGEMKYSAVGGD 263
E ++Y ++ D
Sbjct: 557 EHSNIRYMSLTVD 569
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 29.1 bits (62), Expect = 6.4
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 86 NKNQATILIDNSSLSNGRQLMKTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLI 145
NK +++ N+S S + ++ + T++N ++ + VG+FP+ +S++ LI
Sbjct: 382 NKKLYDLVVFNNSFSG---VFPMNLGDCDTINN----IMAYNNHFVGDFPENIWSFAKLI 434
Query: 146 -AMALKNSRTGSLPVSEI 162
M N+ TG+LP SEI
Sbjct: 435 NIMIYNNNFTGNLP-SEI 451
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 261 GGDTDIEDDADVDGDTEMDAD 281
GGD D EDD D D D E D D
Sbjct: 140 GGDEDGEDDDDEDDDDEEDDD 160
>03_06_0571 +
34804375-34804413,34804895-34804961,34806327-34806541,
34806588-34806740
Length = 157
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 107 KTSISNTYTVDNSQTKYLSAHGKTVGEFPKPAYSYSCLIAMALKNSRTGSLPVSEIY 163
KT+I V + + + + EF PAY + C + + L G P++ ++
Sbjct: 5 KTAIDKELVVLADASSFQAKPFELASEFESPAYVHDCTVYVHLGKRMPGCRPIARLF 61
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 28.7 bits (61), Expect = 8.4
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 26 DLYITDSLQDMLDIDIKNEIATDLSSISDFQIGTKTIISGNIHILDAQSIGQSRTILANG 85
+LY +L D LDI +K ++ LS I F+ +K G I +L + I T + N
Sbjct: 851 ELYGDRALADALDISLKMSLSVPLSDILAFKKLSKAFY-GYIEVLFSNHI----TFVLNL 905
Query: 86 NKNQATILIDNSSLSNGRQLMKTSIS 111
+ N ++ S+L +G + + T IS
Sbjct: 906 DTNTFVHIV--STLESGLKGLDTGIS 929
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 28.7 bits (61), Expect = 8.4
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 26 DLYITDSLQDMLDIDIKNEIATDLSSISDFQIGTKTIISGNIHILDAQSIGQSRTILANG 85
+LY +L D LDI +K ++ LS I F+ +K G I +L + I T + N
Sbjct: 754 ELYGDRALADALDISLKMSLSVPLSDILAFKKLSKAFY-GYIEVLFSSHI----TFVLNL 808
Query: 86 NKNQATILIDNSSLSNGRQLMKTSIS 111
+ N ++ S+L +G + + T IS
Sbjct: 809 DTNTFVHIV--STLESGLKGLDTGIS 832
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,409
Number of Sequences: 37544
Number of extensions: 371417
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 16
length of query: 390
length of database: 14,793,348
effective HSP length: 83
effective length of query: 307
effective length of database: 11,677,196
effective search space: 3584899172
effective search space used: 3584899172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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