GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000444-TA|BGIBMGA000444-PA|undefined
         (893 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.24 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.24 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     26   0.99 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   4.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   4.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   5.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   5.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   5.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   9.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   9.2  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 602 KNKPVHDLSGTQIEEIDANSDDDAPLEISFKFNKNDNQEPQCQEIDENTIQGSEGXXXXX 661
           K  P+  ++   I E   N  +D P ++S K +KN++Q     +  E  ++ S       
Sbjct: 271 KKMPIAIVAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQ 330

Query: 662 XXXXXXXNDQEAVHEIEKDV-NEK 684
                  N+ E  +   K+  NE+
Sbjct: 331 LRKYLCKNEDETKNHYSKNTYNEQ 354


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 602 KNKPVHDLSGTQIEEIDANSDDDAPLEISFKFNKNDNQEPQCQEIDENTIQGSEGXXXXX 661
           K  P+  ++   I E   N  +D P ++S K +KN++Q     +  E  ++ S       
Sbjct: 163 KKMPIAIVAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQ 222

Query: 662 XXXXXXXNDQEAVHEIEKDV-NEK 684
                  N+ E  +   K+  NE+
Sbjct: 223 LRKYLCKNEDETKNHYSKNTYNEQ 246


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 135 DIVEINDTSARKSPRLNNSKSE--NTMPLPENNNIKSDELDSSNDKDIKE 182
           D+   N +    SP LN SKS   +   L +++NI   E D   D+D+ E
Sbjct: 199 DLSPRNGSPTDHSPVLNLSKSGGGSAGSLEDDDNISDPEDDDDKDQDMDE 248


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 762 DKPNKENCT--KVKKPNLISTTNFVVEERKVRRNKPSNYLEESVYLNDSQVTQXXXXXXX 819
           DK ++  C   ++KK   +      V+  +  RN      + S Y N+S+V         
Sbjct: 85  DKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVMMSPPGNVL 144

Query: 820 XXXVLPFIPTASTSDAG 836
              +  + P  S  D G
Sbjct: 145 NLTMPKYEPNPSIIDPG 161


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 762 DKPNKENCT--KVKKPNLISTTNFVVEERKVRRNKPSNYLEESVYLNDSQVTQXXXXXXX 819
           DK ++  C   ++KK   +      V+  +  RN      + S Y N+S+V         
Sbjct: 85  DKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVMMSPPGNVL 144

Query: 820 XXXVLPFIPTASTSDAG 836
              +  + P  S  D G
Sbjct: 145 NLTMPKYEPNPSIIDPG 161


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 143 SARKSPRLNNSKSENTMPLPENNNIKSDELDSSNDKDIKEEPKTPQK 189
           S R S   NN    N    P NN+I     + S + +   E   P+K
Sbjct: 388 SCRSSTFRNNRDEYNVCFRPRNNSILIKNFNDSPESNRSNEIDGPEK 434


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 127 GEEP--EFSADIVEINDTSARKSPRLNNSKSENTMPLPENNNIKSDELDSSNDKDIKEE 183
           G+ P  + + D+ E   + ARK+ RL+  ++E        +N   +++   +D + +EE
Sbjct: 408 GDTPLEDINPDLAEAFSSYARKNARLSFGRAEPVFDGKVPSNGSLNQISDIDDVNFQEE 466


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 127 GEEP--EFSADIVEINDTSARKSPRLNNSKSENTMPLPENNNIKSDELDSSNDKDIKEE 183
           G+ P  + + D+ E   + ARK+ RL+  ++E        +N   +++   +D + +EE
Sbjct: 233 GDTPLEDINPDLAEAFSSYARKNARLSFGRAEPVFDGKVPSNGSLNQISDIDDVNFQEE 291


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 757  LAQLGDKPNKENCTKVKKP 775
            L  + D P++E+CTK  +P
Sbjct: 991  LGLIPDNPSREDCTKPPEP 1009


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 421 NKSDNQSNISVQNSDKKQKDK 441
           NK+D+  +  V +SD ++KD+
Sbjct: 154 NKTDDDDDALVSDSDDREKDE 174


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 138 EINDTSARKSPRLNNSKSENTMPLPENNNIKSDELDSSNDKDIKEEPKTPQKMNFS 193
           E + +  ++SP + +  +++   +PE+NN  S  + ++ +K I++   +  + N S
Sbjct: 694 EKSPSPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLNAIEKLIEKSFDSRSRQNSS 749


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 180 IKEEPKTPQKMNFSVVKITDSIEEVLVDE 208
           + E PK  +K+   V  + D+IE + + +
Sbjct: 12  LAENPKVQEKLYEEVAAVIDNIENITMQQ 40


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.305    0.123    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,550
Number of Sequences: 317
Number of extensions: 7197
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 12
length of query: 893
length of database: 114,650
effective HSP length: 63
effective length of query: 830
effective length of database: 94,679
effective search space: 78583570
effective search space used: 78583570
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 47 (23.0 bits)