GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000444-TA|BGIBMGA000444-PA|undefined
         (893 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          26   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   1.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   2.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   2.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   4.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 70  TLTPSRRSARIRSNTSLILETTQTIDSPRAKRAVRRTSQVVE 111
           T+ P+R+   +  +T+++    QT+ S   +  +  +S++VE
Sbjct: 94  TIPPTRKLPPLHPHTAMVTHLPQTLTSENVEILLEHSSKLVE 135


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 430 SVQNSDKKQKDKRKIVTVDDESVISIDSLFSSCKKKNKKTYFN 472
           S   +++++  +RKI++    + IS  S +++    NKK Y+N
Sbjct: 305 SRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYN 347



 Score = 24.6 bits (51), Expect = 3.6
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 136 IVEINDTSARKSPRLNNSKSENTMPLPENNNIKSDELDSSNDKDIKEEPKTPQKMNFSVV 195
           ++E + T ++     + S + NT        I SD+L+SS+D  +   PK  Q     + 
Sbjct: 79  VLERSKTKSKSPESRDRSNTSNT----SKTFILSDKLESSDDTSLFRGPKGIQINATELQ 134

Query: 196 KITDSIEEVLVDENAT 211
           KI   I   L  ++ T
Sbjct: 135 KIKLEIHRDLPGKSTT 150


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 432 QNSDKKQKDK---RKIVTVDDESVISIDSLFSSCKKKNKKTYFN 472
           ++ DK+++++   RKI++    + IS  S +++    NKK Y+N
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYN 109


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 432 QNSDKKQKDK---RKIVTVDDESVISIDSLFSSCKKKNKKTYFN 472
           ++ DK+++++   RKI++    + IS  S +++    NKK Y+N
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYN 109


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 829 TASTSDAGFTTSFKINV-----LPQ--DTKFVAQTNNITN-FKDQILAKHKLKKFHTFET 880
           T+S+ D  +T +FK+NV     LP   D KF   T+   N FK +      LK    +E 
Sbjct: 51  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEF 110

Query: 881 YKNQ 884
             N+
Sbjct: 111 SDNE 114


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.305    0.123    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,966
Number of Sequences: 429
Number of extensions: 10168
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 893
length of database: 140,377
effective HSP length: 64
effective length of query: 829
effective length of database: 112,921
effective search space: 93611509
effective search space used: 93611509
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 48 (23.4 bits)