Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000443-TA|BGIBMGA000443-PA|undefined
         (56 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22056| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_43445| Best HMM Match : PDZ (HMM E-Value=8.9e-07)                   25   8.5  
SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)                     25   8.5  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.5  

>SB_22056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 16  ETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSNI 55
           ET V I+   + + T Y LLS+         + G I S++
Sbjct: 217 ETEVKIKQFAILQTTAYRLLSVERSPRNVTEVIGWIQSSL 256


>SB_43445| Best HMM Match : PDZ (HMM E-Value=8.9e-07)
          Length = 373

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 8   EVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGT 50
           +V T G+E+ S  ++M +    T   L  ISS N +    +GT
Sbjct: 168 DVRTMGIEDVSALMQMTRRLILTLKVLTPISSMNRKLAMKDGT 210


>SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)
          Length = 238

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 18 SVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSNII 56
          S+S     L+  T Y  +  S  +N +L+INGT  S ++
Sbjct: 48 SISRTNATLHGNTSYISIKSSLKDNGHLSINGTASSVLL 86


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 16   ETSVSIEMLQLYEETKYTLL----SISSGNNRYLAINGTI 51
            E +VS  +L    E +   +    S+SSGN  YL +NG +
Sbjct: 2083 EQTVSYSLLSYQTEFRINAVCLNSSLSSGNAAYLTVNGPL 2122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.128    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,343
Number of Sequences: 59808
Number of extensions: 40243
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 4
length of query: 56
length of database: 16,821,457
effective HSP length: 36
effective length of query: 20
effective length of database: 14,668,369
effective search space: 293367380
effective search space used: 293367380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)