Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000443-TA|BGIBMGA000443-PA|undefined
         (56 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034688-1|AAH34688.1|  685|Homo sapiens ring finger protein (C3...    27   9.4  
AY009109-1|AAG49400.1|  685|Homo sapiens ring-H2 protein protein.      27   9.4  
AL138966-3|CAH73183.1|  685|Homo sapiens ring finger protein (C3...    27   9.4  
AJ010347-1|CAB40414.1|  685|Homo sapiens RING-H2 protein.              27   9.4  
AJ010346-1|CAB40413.1|  685|Homo sapiens RING-H2 protein.              27   9.4  

>BC034688-1|AAH34688.1|  685|Homo sapiens ring finger protein
           (C3H2C3 type) 6 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   DYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSN 54
           +YR  EV      E S+ +E L  +  T     S  +GN  + A++ T P+N
Sbjct: 94  NYRDSEVPRESSHEDSL-LEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNN 144


>AY009109-1|AAG49400.1|  685|Homo sapiens ring-H2 protein protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   DYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSN 54
           +YR  EV      E S+ +E L  +  T     S  +GN  + A++ T P+N
Sbjct: 94  NYRDSEVPRESSHEDSL-LEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNN 144


>AL138966-3|CAH73183.1|  685|Homo sapiens ring finger protein
           (C3H2C3 type) 6 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   DYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSN 54
           +YR  EV      E S+ +E L  +  T     S  +GN  + A++ T P+N
Sbjct: 94  NYRDSEVPRESSHEDSL-LEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNN 144


>AJ010347-1|CAB40414.1|  685|Homo sapiens RING-H2 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   DYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSN 54
           +YR  EV      E S+ +E L  +  T     S  +GN  + A++ T P+N
Sbjct: 94  NYRDSEVPRESSHEDSL-LEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNN 144


>AJ010346-1|CAB40413.1|  685|Homo sapiens RING-H2 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   DYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSN 54
           +YR  EV      E S+ +E L  +  T     S  +GN  + A++ T P+N
Sbjct: 94  NYRDSEVPRESSHEDSL-LEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNN 144


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.309    0.128    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,901,460
Number of Sequences: 224733
Number of extensions: 176607
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 73,234,838
effective HSP length: 36
effective length of query: 20
effective length of database: 65,144,450
effective search space: 1302889000
effective search space used: 1302889000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)