GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000443-TA|BGIBMGA000443-PA|undefined
         (56 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    29   0.48 
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612...    27   1.9  
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809...    27   1.9  
11_06_0722 - 26678873-26680843                                         26   4.5  
07_01_0364 + 2710650-2711228                                           25   7.8  

>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 6   RKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAING 49
           R E  T  + ET  S E ++ Y+  KY  +S + GN +   + G
Sbjct: 325 RDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVVEG 368


>07_03_1554 +
           27659995-27660093,27661084-27661120,27661204-27661280,
           27662272-27662342,27662512-27662590,27662726-27662828,
           27662963-27663082,27663180-27663257,27663416-27663471,
           27663588-27663657,27664179-27664266,27664503-27664800,
           27664943-27665158,27665521-27665841,27666054-27666103,
           27666493-27666553,27666633-27666716,27666926-27667039,
           27667134-27667300,27667559-27667628,27668328-27668507,
           27668619-27668807
          Length = 875

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1   MEDYRRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSNII 56
           +E+    E + A L++    +  LQL ++ ++   S++  N+RY  +   +P N +
Sbjct: 679 LEEIALAEADVARLKQKVAELH-LQLNQQRQHQYGSLADANDRYQHLPNHLPQNFV 733


>01_03_0140 -
           12979580-12980158,12980297-12980479,12980721-12980914,
           12980974-12980998
          Length = 326

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/22 (72%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 35  LSISSGNNRYLAINGTIPSNII 56
           L IS GNN YLAIN  IPS II
Sbjct: 306 LVISVGNNTYLAIN-FIPSIII 326


>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 14  LEETSVSIEMLQLYEETKYTLLSISSGNNRYLAINGTIPSNII 56
           +EE    ++  +  ++ K  L S   G+NR L + G + +N+I
Sbjct: 548 VEEARELLKGKKTMQQRKEALRSQDHGDNRLLVVGGRLANNLI 590


>07_01_0364 + 2710650-2711228
          Length = 192

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 2  EDYRRKEVETAGLEETSVSIEMLQLYE 28
          E  R + VETA +EE   +  M+ +YE
Sbjct: 64 ERMRMQVVETAAVEEEEAAAAMMSVYE 90


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.128    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,336
Number of Sequences: 37544
Number of extensions: 34320
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 14,793,348
effective HSP length: 36
effective length of query: 20
effective length of database: 13,441,764
effective search space: 268835280
effective search space used: 268835280
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)