GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000443-TA|BGIBMGA000443-PA|undefined
         (56 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like p...    26   2.8  
U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like p...    26   2.8  
AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like ...    26   2.8  
Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    25   8.4  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    25   8.4  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    25   8.4  

>U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform b protein.
          Length = 564

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 18  SVSIEMLQLYEETKYTLLSISS-----GNNRYLAINGTIPSNI 55
           SVS+E ++LY E  Y LL+  +      + + + + G +P N+
Sbjct: 131 SVSVEFVELYNEVIYDLLNAKNKVQLRDSGKDIQLVGALPKNV 173


>U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform a protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 18  SVSIEMLQLYEETKYTLLSISS-----GNNRYLAINGTIPSNI 55
           SVS+E ++LY E  Y LL+  +      + + + + G +P N+
Sbjct: 131 SVSVEFVELYNEVIYDLLNAKNKVQLRDSGKDIQLVGALPKNV 173


>AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like
           protein protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 18  SVSIEMLQLYEETKYTLLSISS-----GNNRYLAINGTIPSNI 55
           SVS+E ++LY E  Y LL+  +      + + + + G +P N+
Sbjct: 131 SVSVEFVELYNEVIYDLLNAKNKVQLRDSGKDIQLVGALPKNV 173


>Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical
           protein W01C9.2 protein.
          Length = 564

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 5   RRKEVETAGLEETSVSIEMLQLYEETKYTLLSISSGNN--RYLAINGTIPSNII 56
           RR    T  +E    S+EM+ L  ET +      SG N      IN T+P+  +
Sbjct: 160 RRNPTSTQDIEALVSSVEMMLLGNETMFFGDEEGSGENSGNDEIINTTLPTTTV 213


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 18  SVSIEMLQLYEETKYTLLS 36
           SVS+E ++LY E  Y LL+
Sbjct: 131 SVSVEFVELYNEVIYDLLN 149


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 18  SVSIEMLQLYEETKYTLLS 36
           SVS+E ++LY E  Y LL+
Sbjct: 131 SVSVEFVELYNEVIYDLLN 149


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 18  SVSIEMLQLYEETKYTLLS 36
           SVS+E ++LY E  Y LL+
Sbjct: 129 SVSVEFVELYNEVIYDLLN 147


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.128    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,866
Number of Sequences: 27539
Number of extensions: 33577
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 7
length of query: 56
length of database: 12,573,161
effective HSP length: 37
effective length of query: 19
effective length of database: 11,554,218
effective search space: 219530142
effective search space used: 219530142
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)