GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000443-TA|BGIBMGA000443-PA|undefined
         (56 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    28   0.86 
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr...    28   0.86 
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    25   4.6  
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr...    25   6.1  

>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 17  TSVSIEMLQLYEETKYTLLSISSGNN 42
           T V + +L++Y E  Y LLS +S NN
Sbjct: 166 TFVQVTVLEVYNEEIYDLLSTNSSNN 191


>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein
          Length = 919

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 14  LEETSVSIEMLQLYEETKYTLLSISSGN 41
           LE  S+S+  LQLY ET   LL  S+ N
Sbjct: 192 LETDSISVSYLQLYMETVQDLLDPSNDN 219


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
            contains similarity to potato calmodulin-binding protein
            PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 2    EDYRRKEVETAGLEETSVSIEMLQLYEETKYTLL 35
            E+ R++E E    E+TSV  E ++LY+     LL
Sbjct: 1330 EETRKEEEEEELKEDTSVDGEKMELYQTEAVELL 1363


>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein similar to
           kinesin-like protein GB:CAB41097 GI:5541717 from
           [Arabidopsis thaliana]; contains Pfam profiles PF00225:
           Kinesin motor domain, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 894

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 14  LEETSVSIEMLQLYEETKYTLLSISSGN 41
           L+  S+S+  LQLY ET   LL  ++ N
Sbjct: 182 LDTDSISVSYLQLYMETIQDLLDPTNDN 209


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.128    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,290
Number of Sequences: 28952
Number of extensions: 32917
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 4
length of query: 56
length of database: 12,070,560
effective HSP length: 37
effective length of query: 19
effective length of database: 10,999,336
effective search space: 208987384
effective search space used: 208987384
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)