GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000442-TA|BGIBMGA000442-PA|IPR000863|Sulfotransferase
         (825 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   3.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   8.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 143 HDYETDGERMPLATVIQDHGRLDGVQRVLFGSGLQFWLH 181
           HD++          VIQ H  + G  R   G G + W H
Sbjct: 47  HDFDNSDFFQSEHAVIQTHPSIGGGPRFSSGVGRKAWKH 85


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 143 HDYETDGERMPLATVIQDHGRLDGVQRVLFGSGLQFWLH 181
           HD++          VIQ H  + G  R   G G + W H
Sbjct: 47  HDFDNSDFFQSEHAVIQTHPSIGGGPRFSSGVGRKAWKH 85


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 305  QFALEHGIPTNSCYSVSPHHSGVYPVH 331
            Q AL      +  + + PH S V P+H
Sbjct: 1401 QIALTSTTTNSLTFKLKPHESDVEPIH 1427


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,875
Number of Sequences: 317
Number of extensions: 9781
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 825
length of database: 114,650
effective HSP length: 62
effective length of query: 763
effective length of database: 94,996
effective search space: 72481948
effective search space used: 72481948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)