GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000442-TA|BGIBMGA000442-PA|IPR000863|Sulfotransferase
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    31   0.65 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   2.0  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    29   2.6  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   8.0  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 164 LDGVQRVLFGSGLQFWLHRLLFLDALSYLS 193
           LD   R   G  ++ WL++LL LDA SY+S
Sbjct: 460 LDEPIRYAMGDRIELWLNKLLCLDAASYVS 489


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 282 WNHQQPHLYNNVSQLEAEMMLNKQFALEHGIPTNSCYSVSP--HHSGVYPVHEPLYEAWR 339
           WN   P    + S  + ++ L++QFA       +S YS+ P  H     P    L  + R
Sbjct: 30  WNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPSKNPTSSSL--STR 87

Query: 340 KVWDVK-VTSTEEYPHLRPARL 360
           K W  K + S + +P   P RL
Sbjct: 88  KRWRQKRLWSFKNFPFRPPTRL 109


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 752 NDDADLKAPKELVGGEKTKCLGKSKGRVYPPMEERSAKFLRRYYTPHNTALSKLLVRVGR 811
           N+ A+ ++ K  VG      LGK+ GR +    +R  + ++  +    T ++KL  +VG 
Sbjct: 6   NNSANYQSKKR-VGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPITKLFPKVGH 64

Query: 812 PVPHWLK 818
              H  K
Sbjct: 65  STGHLKK 71


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 249 YSAKYYHHGTPTENLGDDALLKHREYFNWFCHMWNHQQPHLYNNVS 294
           YS  Y    +PT +L D A+ +  E+   +CH+W   +P  Y+ ++
Sbjct: 321 YSMLYRMLRSPTLDL-DYAIFQLEEWRKEWCHLWEQPEPQ-YSRIA 364


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,066,454
Number of Sequences: 5004
Number of extensions: 183640
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 6
length of query: 825
length of database: 2,362,478
effective HSP length: 79
effective length of query: 746
effective length of database: 1,967,162
effective search space: 1467502852
effective search space used: 1467502852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)