GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000442-TA|BGIBMGA000442-PA|IPR000863|Sulfotransferase
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189     31   4.9  

>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
          Length = 470

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 670 SMLRSEPAVVMNTLQKFLKISPHIDYNKLLKIAITERGELYRLGRFEKMGNVIIERLYGL 729
           S LRSE  +  + ++K +K         L K  + E  E ++  + EK+ N +   +  L
Sbjct: 123 SALRSEIDLARSHVRKLIKEQKSEGIESLKKQLVQEM-ESWKSKQKEKVANALQYIVSEL 181

Query: 730 EVANVGRRSLVRINNVRTRFAFNDDADLKAPKELVGGEKTKCLGKSKGRV 779
           +     RR   RIN        N +A L+A  + +  E+     KSKGRV
Sbjct: 182 DSEKKSRRRAERINKKLGMALANTEASLQAATKELERER-----KSKGRV 226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,978,531
Number of Sequences: 37544
Number of extensions: 1163167
Number of successful extensions: 2217
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 1
length of query: 825
length of database: 14,793,348
effective HSP length: 88
effective length of query: 737
effective length of database: 11,489,476
effective search space: 8467743812
effective search space used: 8467743812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)