Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000441-TA|BGIBMGA000441-PA|undefined
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    29   0.31 
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   3.8  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   5.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   5.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   5.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   6.7  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   6.7  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   8.8  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    24   8.8  

>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 12  LLECGSGEYSHNHKTLAPRCCFWLASHV-NVRKCVAGVMLLSVL 54
           +++C  G  S NHK   P+    +A  V N +K + GVM+ S L
Sbjct: 278 MIDCSHGNSSKNHKN-QPKVAACIAEQVANGQKAITGVMIESHL 320


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 44  CVAGVMLLSVLTILFYSYYVTI-----PLTSLVW 72
           CVA V  + VL I+ + YY +I     PL+S+ W
Sbjct: 75  CVASVDKVFVLDIVQHDYYASIQCDQDPLSSISW 108


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 128 VANRISLIYKLFYAPFEPKNREDGGF 153
           V +R ++I K F+  F  +NRE G F
Sbjct: 5   VKSRDTVIQKSFFEEFNSQNREMGSF 30


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 128 VANRISLIYKLFYAPFEPKNREDGGF 153
           V +R ++I K F+  F  +NRE G F
Sbjct: 5   VKSRDTVIQKSFFEEFNSQNREMGSF 30


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 128 VANRISLIYKLFYAPFEPKNREDGGF 153
           V +R ++I K F+  F  +NRE G F
Sbjct: 5   VKSRDTVIQKSFFEEFNSQNREMGSF 30


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 99  DARLRIDAKVLVIVESAYSRLGRDIAELLVANRISLI 135
           +A   +D+K  V+V+ A     R    +++A+R+S I
Sbjct: 593 EATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTI 629


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 94  RDHRSDARLRI--DAKVLVIVESAYSRLGRDIAELLVANRISLIYKLFYAPFEPKNRED 150
           RD RS   LR   + K L I  S +++   DIA+LLV  RI  + KL      P  R D
Sbjct: 303 RDIRSLDHLRTLENLKHLRITLSYFNK-PTDIAKLLVIARIPSLVKLNDVNISPNERLD 360


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 122 DIAELLVANRISLIYKLFYAPFEP 145
           D+ E +++NRIS    L   PFEP
Sbjct: 491 DLPERILSNRISSRLGLSRVPFEP 514


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 40  NVRKCVAGVMLLSVLTILFYSYYVT-IPLTSLVW 72
           N+  C     +    ++LF++YY T IP  +  W
Sbjct: 287 NISACSVPAFIDQTFSLLFFTYYGTIIPWNNFNW 320


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,680
Number of Sequences: 5004
Number of extensions: 19070
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 9
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)