GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000441-TA|BGIBMGA000441-PA|undefined
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094...    29   2.2  
07_03_0124 - 13723597-13724657,13726179-13726413                       27   5.0  
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    27   8.7  
08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923           27   8.7  
03_01_0311 + 2453057-2454610                                           27   8.7  

>01_06_0725 +
           31508156-31508277,31508950-31509118,31509311-31509406,
           31510037-31510097,31510387-31510451,31511104-31511178,
           31511276-31511351,31512140-31512303,31512398-31512421
          Length = 283

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 42  RKCVAGVMLLS----VLTILFYSYYVTIPLTSLVWRDRIPRPL 80
           R+C  GV L S    V+ +L  S+ VTI    L+W  R   P+
Sbjct: 80  RRCCPGVQLGSRQKFVILVLLLSFVVTIAFAILIWIGRGENPI 122


>07_03_0124 - 13723597-13724657,13726179-13726413
          Length = 431

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 37  SHVNVRKCVAGVMLLSVLTILFYSYYVTIPLTSLV 71
           S + + K V  VM+LS LT+L+  Y   IPL  LV
Sbjct: 260 SVIGLSKVVGQVMVLS-LTVLYNKYLKKIPLRRLV 293


>10_08_0472 -
           18154797-18155048,18155332-18156318,18156424-18156546,
           18156654-18156808,18157611-18157824,18158977-18159077,
           18159162-18159285,18159584-18159655,18159897-18159961,
           18160167-18160233,18160917-18161015,18161099-18161167,
           18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 95  DHRSDARLRIDAKVLVIVESAYSRLGRDIAELLVANRISLIYKL 138
           D + D  +R +AK+L   +      G DI  L+   R  L YKL
Sbjct: 290 DSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKL 333


>08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923
          Length = 135

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 31 CCFWLASHVNVRKCVAGVML--LSVLTILFYSYYVTIPLTSLVWR 73
          C    AS V++   V  V+L  LS+L +LF   ++++P+  L W+
Sbjct: 39 CAVRRASAVSLAADVLLVLLCSLSILGLLFRHLHISVPVDPLEWQ 83


>03_01_0311 + 2453057-2454610
          Length = 517

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 110 VIVESAYSRLGRDIAELLVANRISLIYKLFYAPFEPKNR 148
           V VE    R+  D+AE +    ISL+ +L YA  +P+++
Sbjct: 431 VSVEETLRRIPPDVAEKMTETVISLVPRLLYA--DPRSK 467


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,142,004
Number of Sequences: 37544
Number of extensions: 135680
Number of successful extensions: 275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)