GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000441-TA|BGIBMGA000441-PA|undefined
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               32   0.24 
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_34546| Best HMM Match : Sec20 (HMM E-Value=9.2)                     28   2.9  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   3.9  
SB_44195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 110 VIVESAYSRLGRDIAELLVANRISLIYKLFYAPFEPKNR 148
           V+V+  +  LG   + +   NR S ++KL+Y   EPK R
Sbjct: 378 VLVDQEHQNLGGQSSRIRTLNRGSRLFKLYYTKPEPKGR 416


>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 121 RDIAELLVANRISLIYKLFYAPFEPKNRE 149
           RD + +   NR S ++KL+Y   EPK R+
Sbjct: 155 RDSSRIRTLNRRSRLFKLYYTKPEPKGRK 183


>SB_34546| Best HMM Match : Sec20 (HMM E-Value=9.2)
          Length = 214

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 108 VLVIVESAYSRLGRDIAELLVANRISLIYKLFYAPFEPKNRE 149
           V+  VE    +L    + +   NR S ++KL+Y   EPK R+
Sbjct: 153 VIADVEHFSEKLADKSSRIRTLNRRSRLFKLYYTKPEPKGRK 194


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 9   RAPLLECGSGEYSHNHKTLAPRCCFWLASHVNVRKCVAGVMLLSVLTILFYSY 61
           RAP  +    E+++      P C  WL     +  C +G  L S   +L+Y +
Sbjct: 366 RAPFEQVKYQEFTNGEHKFLPECSCWLEL---IEACKSGTRLSSSTYLLYYGW 415


>SB_44195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 116 YSRLGR-DIAELLVANRISLIYKLFYAPFEPKNRE 149
           Y+ L R D + +   NR S ++KL+Y   EP+ R+
Sbjct: 18  YTNLNRRDSSRIRTLNRRSRLFKLYYTKPEPEGRK 52


>SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 20 YSHNHKTLAPRCCFWL-ASHVNVRKCVAGVMLLSVLTILFYSYYVTIPLTSLV 71
          + H H+      C W  +S VNV   V  +++++V  I+     VT+ +   V
Sbjct: 5  HHHRHRRRYRHRCLWTSSSLVNVTFTVTSIVIVAVFVIVVVIVVVTVTVIDTV 57


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 45  VAGVMLLSVLTILFYSY-YVTIP 66
           V G +L++ LT+L+Y Y YVT P
Sbjct: 313 VEGFLLVATLTLLYYLYDYVTSP 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,701,153
Number of Sequences: 59808
Number of extensions: 150389
Number of successful extensions: 346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)