GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000441-TA|BGIBMGA000441-PA|undefined
         (153 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical pr...    30   0.84 
AB038044-1|BAB62394.1|  852|Caenorhabditis elegans N-deacetylase...    29   1.5  
AB037942-1|BAB61757.1|  814|Caenorhabditis elegans N-deacetylase...    29   1.5  
AB037941-1|BAB61756.1|  826|Caenorhabditis elegans N-deactylase/...    29   1.5  

>Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical
           protein C34C6.1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 26  TLAPRCCFWLASHVNVRKCVAGV-MLLSVLT-ILFYSYY 62
           +L P+  F+L+ H  + KCVA + M+L+ +T +L  +YY
Sbjct: 103 SLIPKIYFYLSVHTRLSKCVAHICMVLNRMTCVLMPTYY 141


>AB038044-1|BAB62394.1|  852|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 852

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/28 (39%), Positives = 22/28 (78%)

Query: 105 DAKVLVIVESAYSRLGRDIAELLVANRI 132
           DA++LVI++S +SR G+ I ++L + ++
Sbjct: 75  DARILVILDSLFSRHGKTIIQILNSQKL 102


>AB037942-1|BAB61757.1|  814|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/28 (39%), Positives = 22/28 (78%)

Query: 105 DAKVLVIVESAYSRLGRDIAELLVANRI 132
           DA++LVI++S +SR G+ I ++L + ++
Sbjct: 37  DARILVILDSLFSRHGKTIIQILNSQKL 64


>AB037941-1|BAB61756.1|  826|Caenorhabditis elegans
           N-deactylase/N-sulfotransferase protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/28 (39%), Positives = 22/28 (78%)

Query: 105 DAKVLVIVESAYSRLGRDIAELLVANRI 132
           DA++LVI++S +SR G+ I ++L + ++
Sbjct: 49  DARILVILDSLFSRHGKTIIQILNSQKL 76


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,077
Number of Sequences: 27539
Number of extensions: 106466
Number of successful extensions: 302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)