GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000441-TA|BGIBMGA000441-PA|undefined
         (153 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa...    29   1.0  
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si...    27   4.2  
At5g64470.2 68418.m08100 expressed protein similar to unknown pr...    27   5.6  
At5g64470.1 68418.m08099 expressed protein similar to unknown pr...    27   5.6  
At4g25450.1 68417.m03665 ABC transporter family protein similar ...    27   7.3  

>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); similar to GI:4928397
           from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
           579-590 (1999))
          Length = 413

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 34  WLASHVNVRKCVAGVMLLSVLT 55
           WL+SH N   C AG+ ++SV T
Sbjct: 208 WLSSHTNCPLCRAGIAMISVTT 229


>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
           similar to SP|P47047 ATP-dependent RNA helicase DOB1
           {Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
           thaliana] GI:16024936; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 988

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 67  LTSLVWRDRIPRPLTQCXXXXXXXXXXRDH-RSDARLRIDAKVLVIVESAYSRLGRDIAE 125
           L+  VWR+R+P                +D  R  A +++D KV + VES       DI E
Sbjct: 855 LSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVESFVQSFRPDIME 914

Query: 126 LLVA 129
            + A
Sbjct: 915 AVYA 918


>At5g64470.2 68418.m08100 expressed protein similar to unknown
          protein (gb|AAD15463.1)
          Length = 407

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 48 VMLLSVLTILFYSYYVTIPLTS 69
          ++LLS+L +LFYS  +  P+TS
Sbjct: 26 ILLLSLLLLLFYSLILRRPITS 47


>At5g64470.1 68418.m08099 expressed protein similar to unknown
          protein (gb|AAD15463.1)
          Length = 325

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 48 VMLLSVLTILFYSYYVTIPLTS 69
          ++LLS+L +LFYS  +  P+TS
Sbjct: 26 ILLLSLLLLLFYSLILRRPITS 47


>At4g25450.1 68417.m03665 ABC transporter family protein similar to
           multidrug resistance protein 2 SP:P21440 from [Mus
           musculus]
          Length = 714

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 99  DARLRIDAKVLVIVESAYSRLGRDIAELLVANRISLI 135
           +A   +DA    +V+SA +RL +D   L++A+R+S +
Sbjct: 636 EATSALDAVSERLVQSALNRLMKDRTTLVIAHRLSTV 672


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,422
Number of Sequences: 28952
Number of extensions: 103011
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 12,070,560
effective HSP length: 75
effective length of query: 78
effective length of database: 9,899,160
effective search space: 772134480
effective search space used: 772134480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)