Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.1  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.9  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    22   4.9  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 175 KFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDM 211
           KF    +  I++ + +    DF+ + HLL    NLD+
Sbjct: 177 KFMIFTSTCIYTNLLRIIEADFSKLNHLLSGTENLDL 213


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 46  GRAWKLDE 53
           GRAWK+DE
Sbjct: 293 GRAWKMDE 300


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/28 (25%), Positives = 18/28 (64%)

Query: 70  LKERNMLYTMEHECNERVRLFPNPERID 97
           LK  +M++   ++ +   +++P+PE+ D
Sbjct: 80  LKAGSMVHLHIYDMHHNPQVYPDPEKFD 107


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,186
Number of Sequences: 317
Number of extensions: 2677
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)