Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S...    64   2e-11
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    33   0.049
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    31   0.11 
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   2.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   4.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.3  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.8  

>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
           L4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 144

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 25  TQDLMEFFDAKKNWPETN--IRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHE 82
           T  L  FF  K+  P  +   + GRAW  +ELR KS  DLH LWY  L+E+N+L+T   E
Sbjct: 35  THPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAE 94

Query: 83  CNERVRLFP--NPERIDKVEESMNNIESVIRERNIAY 117
                   P  + ER+  V ++M  I+ V+ ER  AY
Sbjct: 95  MKRLQLTIPKASNERVLAVNKTMAAIKFVLWERQRAY 131


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 17  RDFHTTKPTQDLMEFFDAKKNWPETNIRVGRAWK-LDELRLKSNTDLHKLWYVLLKERNM 75
           R+    K    L+   ++ K   ETNIR+    K L+ LR+K++ DL+++  +  +   +
Sbjct: 473 REIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGL 532

Query: 76  LYTMEHECNERVRLFPNPE-RIDKVEESMNNIESVIRE-RNIAYYKLET 122
              ++    E+ RL    E RI   E +++ +   I E RN    K ET
Sbjct: 533 TLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEET 581


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 199 VQHLLKRFPNLDMDTLKAEYPN-VDIEKAKRTKK 231
           VQ  LK++P+LD   LKA YP+  D++KA + KK
Sbjct: 328 VQEQLKQYPDLD-SILKAAYPDPKDLKKAMKQKK 360


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 182 EKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKRTK 230
           +K    V K++++   H +H L+    LD + +K+E    D+E+ KR K
Sbjct: 194 DKKRKHVSKSNSK---HAKHELRTNRMLDGENVKSETSVTDMERVKRVK 239


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 155 NTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRD 195
           N +W+ P LKHG ++    K    L N  IH + +    +D
Sbjct: 150 NGQWITPSLKHGLLSGTMRKNL--LENGSIHEDDKGLLQKD 188


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 63   HKLWYVLLKERNMLYTMEHECNERVRLF-PNPERIDKVEESMNNI 106
            H+LWY  L+E +  Y  +H+ +  + +  P  E ++K   +++ I
Sbjct: 1823 HELWYEGLEEASQAYFSDHDISLMIDIVKPLHETLEKGPSTLSEI 1867


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 186 SEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEK 225
           SE    HN  F ++ H  K+ P +  ++ K+ +    +E+
Sbjct: 357 SEELARHNNVFRYIHHNQKQLPEIAFNSFKSRFQMPTVEE 396


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 83   CNERVRLFPNPERIDKVEESMNNIESVI-RERNIAYYKLETGETGERPVKDVINLIGMPE 141
            C  R  L    E + K E     + S+I R R+  YY   T E  +  + +  NL   PE
Sbjct: 1038 CINRGLLEQLNEVLQKSENFHTQLVSLISRARDPDYYSRPTIEEAKTVLAESENLTNKPE 1097

Query: 142  EY 143
            EY
Sbjct: 1098 EY 1099


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 167 FINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVD 222
           F  S +   F  LY       + K   + +NHVQ +++    L  +T+ A Y N D
Sbjct: 37  FQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIR--SRLKEETVPAIYKNYD 90


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 134 INLIGMPEEYQPSEYDTPKFMNTRWVRPYLKHGFIN 169
           +N + +P + + + Y+ P     +  RP    GF+N
Sbjct: 534 LNRLDLPSQDKSTSYEVPNGTENQSPRPVTSLGFVN 569


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,436
Number of Sequences: 5004
Number of extensions: 56443
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 10
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)