Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)                50   1e-06
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            29   3.4  
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)                    28   7.9  

>SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)
          Length = 119

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 67  YVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKL 120
           YVLLKERNML T+ HE   +    P+PER  KV++SM  ++ V+ ER  A  +L
Sbjct: 2   YVLLKERNMLDTLMHEAKRQGVPMPSPERYHKVKKSMAMVKLVLGERERAIQEL 55


>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 82  ECNERVRLFPNPERIDKVEESMNNIESVIRER--NIAYYKLETGETGERPVKDVINLIGM 139
           ECN ++R+  NPE+I K+    +N+          +  ++L+ G+T ++P+K VI  I +
Sbjct: 155 ECNLKLRI--NPEKI-KIPIIFHNLRGYDTHFIIQLPVHELQLGKTSQQPIKRVIE-IHL 210

Query: 140 PE 141
           PE
Sbjct: 211 PE 212


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 63  HKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRE 112
           H + ++L+K+ N  YT+E     +     + ++I ++E+SM   E +  E
Sbjct: 383 HLIRHMLVKDPNQRYTIEQIQKHKWLQAADSQKISEIEQSMREFEKISME 432


>SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 94  ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDV 133
           ER+ K+EE+MNN+  +I E      +L +    ER   ++
Sbjct: 21  ERLAKIEENMNNMPRIIEEYRKKMIELRSKRKDERKASNL 60


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 174 KKFRRLY-NEKIHSEVRKAHNRDFNHVQHLLKRFPNL--DMDTLKAEYPNVDIEKAKRTK 230
           +K R+L  +EK+  E +KA   +    Q LL+R  NL  DM ++  +  ++ +E    TK
Sbjct: 718 RKIRKLLTDEKLGEETKKARRLEEERRQRLLERTQNLSEDMPSMDWKVDSLVLESDPETK 777

Query: 231 K 231
           +
Sbjct: 778 E 778


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 50  KLDELRLKSNTD---LHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNI 106
           KL+EL  K+  +   L K +   ++ERN +     E NE V +F     I        ++
Sbjct: 426 KLNELINKAEENMVQLRKRYETSVQERNDMGIQLIERNEEVCVFYEKLNIQDTMIRNGDV 485

Query: 107 ESVIRERNIAYYKLETGE 124
           E   RE  I + K+E  E
Sbjct: 486 ELKAREEEIRFLKMELNE 503


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 7    INTAAACIVKRDFHTTKPTQDLMEFFDAKKNWPETN 42
            INT  A   KR+FH  K T+ ++++F + KN   +N
Sbjct: 1108 INTTIA--TKRNFHQWKSTKAIIDWFTSTKNKTASN 1141


>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 7   INTAAACIVKRDFHTTKPTQDLMEFFDAKKNWPETN 42
           INT  A   KR+FH  K T+ ++++F + KN   +N
Sbjct: 214 INTTIA--TKRNFHQWKSTKAIIDWFTSTKNKTASN 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,644,929
Number of Sequences: 59808
Number of extensions: 367515
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 8
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)