Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
(240 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97016-2|ABC71840.1| 216|Caenorhabditis elegans Hypothetical pr... 128 3e-30
U97016-1|ABC71839.1| 234|Caenorhabditis elegans Hypothetical pr... 128 3e-30
AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical ... 31 0.56
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 31 0.74
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 31 0.98
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 31 0.98
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 31 0.98
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 31 0.98
Z73422-2|CAA97765.1| 450|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41625-2|AAA83326.1| 264|Caenorhabditis elegans Hypothetical pr... 29 2.3
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 29 2.3
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL033513-1|CAA22078.2| 512|Caenorhabditis elegans Hypothetical ... 29 3.9
AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical... 29 3.9
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z49909-1|CAA90105.1| 298|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 28 5.2
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 28 6.9
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 28 6.9
AF025453-1|AAK31407.1| 520|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 27 9.1
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 27 9.1
U88184-14|AAK31520.1| 821|Caenorhabditis elegans Hypothetical p... 27 9.1
U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U97016-2|ABC71840.1| 216|Caenorhabditis elegans Hypothetical
protein B0261.4b protein.
Length = 216
Score = 128 bits (310), Expect = 3e-30
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 5/147 (3%)
Query: 22 TKPTQDLMEFFDAKKNWPETNIRV----GRAWKLDELRLKSNTDLHKLWYVLLKERNMLY 77
T+ + + +FFD + N+ + +R GR+W +ELRLKSN+DLHKLWYV LKERNML
Sbjct: 21 TRFSSTMKQFFDDEANFGKAELRPKHRPGRSWTAEELRLKSNSDLHKLWYVCLKERNMLI 80
Query: 78 TMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLI 137
TM+ R R PNPER+D+V E+M+ IESV+ ERN A ++LETGE+ + + +
Sbjct: 81 TMKKAHTSRARNMPNPERLDRVHETMDRIESVVHERNDAVFRLETGESAAPRKRTITSFA 140
Query: 138 GMPEEYQPSEYDTPKFMNTR-WVRPYL 163
G + Q +E+ P + + + PYL
Sbjct: 141 GFTYQKQATEHFAPPQLGQKEYETPYL 167
>U97016-1|ABC71839.1| 234|Caenorhabditis elegans Hypothetical
protein B0261.4a protein.
Length = 234
Score = 128 bits (310), Expect = 3e-30
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 5/147 (3%)
Query: 22 TKPTQDLMEFFDAKKNWPETNIRV----GRAWKLDELRLKSNTDLHKLWYVLLKERNMLY 77
T+ + + +FFD + N+ + +R GR+W +ELRLKSN+DLHKLWYV LKERNML
Sbjct: 39 TRFSSTMKQFFDDEANFGKAELRPKHRPGRSWTAEELRLKSNSDLHKLWYVCLKERNMLI 98
Query: 78 TMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLI 137
TM+ R R PNPER+D+V E+M+ IESV+ ERN A ++LETGE+ + + +
Sbjct: 99 TMKKAHTSRARNMPNPERLDRVHETMDRIESVVHERNDAVFRLETGESAAPRKRTITSFA 158
Query: 138 GMPEEYQPSEYDTPKFMNTR-WVRPYL 163
G + Q +E+ P + + + PYL
Sbjct: 159 GFTYQKQATEHFAPPQLGQKEYETPYL 185
>AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical
protein H16O14.1 protein.
Length = 977
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 36 KNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKER--NML---------YTMEH--E 82
K W T +R+ ++++ ++ TDL K Y L + N++ YT E +
Sbjct: 743 KTWKNTTVRLFAIAQMEDNNVQMKTDLEKFLYHLRIDAAVNVIEMTDSDISDYTYERTMK 802
Query: 83 CNERVRLFPNPERIDKVEESMNNIESVIRERNIA 116
ER + N + D+ ++ N++E V RER ++
Sbjct: 803 MEERNQYLKNLNKSDRDKDIQNHLEIVTRERKLS 836
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 185 HSEVRKAHNRDFNHVQHLLKRFPNLD---MDTLKAEYPNVDIEKAKRTKKSRGHF 236
+ E+RK H R FNH++ +D +DT E P DIE + TK R F
Sbjct: 850 NDEIRKGH-RKFNHLEQTEPTTNRVDASRLDTDSEESPEEDIEWSTATKLIRDKF 903
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 63 HKLW-YVLLKERNMLYTMEHECNERVRLFPNPERIDKV----EESMNNIESVIRERNIAY 117
H +W + L+K + ++ ++ ++ ++LF +P+ ++KV EES+ +++ ++N++
Sbjct: 1371 HVIWLFKLIKSSSRMFERKNLFDQSLKLFLSPDEMEKVHTFEEESVEDMKRETEKKNLSS 1430
Query: 118 YKLETGETGER 128
T ER
Sbjct: 1431 NDERIHRTAER 1441
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
protein F48E3.3 protein.
Length = 1493
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 74 NMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIR 111
N L +++ N RV + NPE ++K ES N+I S IR
Sbjct: 733 NSLQILKNSANSRVGIIFNPESVEKACES-NSISSYIR 769
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 63 HKLW-YVLLKERNMLYTMEHECNERVRLFPNPERIDKV----EESMNNIESVIRERNIAY 117
H +W + L+K + ++ ++ ++ ++LF +P+ ++KV EES+ +++ ++N++
Sbjct: 1371 HVIWLFKLIKSSSRMFERKNLFDQSLKLFLSPDEMEKVHTFEEESVEDMKRETEKKNLSS 1430
Query: 118 YKLETGETGER 128
T ER
Sbjct: 1431 NDERIHRTAER 1441
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 63 HKLW-YVLLKERNMLYTMEHECNERVRLFPNPERIDKV----EESMNNIESVIRERNIAY 117
H +W + L+K + ++ ++ ++ ++LF +P+ ++KV EES+ +++ ++N++
Sbjct: 1358 HVIWLFKLIKSSSRMFERKNLFDQSLKLFLSPDEMEKVHTFEEESVEDMKRETEKKNLSS 1417
Query: 118 YKLETGETGER 128
T ER
Sbjct: 1418 NDERIHRTAER 1428
>Z73422-2|CAA97765.1| 450|Caenorhabditis elegans Hypothetical
protein B0564.3 protein.
Length = 450
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 118 YKLETGETGERPVKDVINLIGMPEEYQPSEYDTPKFMNT---RWVRPYLKHGFINSLAV 173
YK GE+ +R + ++ Y P E+ F+ T RW + Y GFI+++ +
Sbjct: 50 YKTAMGESSQRTFESLVRYFDKRLSYIPLEFVLGFFVTTVVNRWTKLYQTIGFIDNVGL 108
>U41625-2|AAA83326.1| 264|Caenorhabditis elegans Hypothetical
protein K03A1.4a protein.
Length = 264
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 168 INSLAVKKFRRLYNEKIHSEVRKAH--NRDFNHVQHLLKRFPNLDMDTLKA 216
IN+ A K R H+ ++K + N D +H L F L+MD+LKA
Sbjct: 35 INTTAYVKSREANLRNPHNYLKKTNLSNSDLRSRRHFLTLFKLLEMDSLKA 85
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 182 EKIHSEVRKAHNRDFNHVQHLLKR--FPNLDMDTL 214
+K EVRK +D+N +Q KR FPN D++ L
Sbjct: 337 QKFTDEVRKYCQKDWNDIQDGFKRNEFPNADIERL 371
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
protein W05B2.4 protein.
Length = 2265
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 64 KLWYVLLKERNMLYTMEHECNERVRLFPNPERI-DKVEESMNNIESVIRERNIA 116
KLWY +LK+ + +E +L P ERI ++EE M+ E N+A
Sbjct: 99 KLWYYVLKKHPLKPRVEWSFQRVHKLSPKNERIAQELEELMDCAERYALIENVA 152
>AL033513-1|CAA22078.2| 512|Caenorhabditis elegans Hypothetical
protein Y70D2A.2 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.9
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 63 HKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLET 122
H W + +E ++L E E V NPE +D + +S+N + + N Y +
Sbjct: 117 HMEWILKTEEYSVL--REDERYPMVACIGNPESLDIILDSVNQLMRIHSNFNTGYVHIGA 174
Query: 123 GETGERPVKDVINLIGMPEEYQPSEYDTPK----FMNTRWVRPYLKHGFINSLAVKKFRR 178
E + + + E P +YD K F + R V + + ++ + +
Sbjct: 175 DEAFQ------VGICDADREILPVKYDNNKLRMIFDHLRMVSLNITEEYPSTKVLMWYDE 228
Query: 179 LYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNV 221
L + + E+ K +N D + + K NLD D + N+
Sbjct: 229 LKSAPL--ELIKEYNLDNLVIPVVWKYTANLDNDLPSEMWKNM 269
>AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical
protein Y38H6C.21 protein.
Length = 278
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 161 PYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHL 202
P L + + L + K RR NEK HS+ +KAH FN + ++
Sbjct: 26 PILNNLTFSLLFLHKRRRKSNEK-HSDFQKAHTPIFNQLYYI 66
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 179 LYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMP 238
L+ +++H + N F + LL++ + +D LK YPNV E+ ++ H+
Sbjct: 242 LHTQQLHYKELDLINLQFEYFGELLQQTLS-GLDYLKQYYPNVGFEEVHSKVRNLTHYFL 300
Query: 239 TY 240
Y
Sbjct: 301 YY 302
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 179 LYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMP 238
L+ +++H + N F + LL++ + +D LK YPNV E+ ++ H+
Sbjct: 242 LHTQQLHYKELDLINLQFEYFGELLQQTLS-GLDYLKQYYPNVGFEEVHSKVRNLTHYFL 300
Query: 239 TY 240
Y
Sbjct: 301 YY 302
>Z49909-1|CAA90105.1| 298|Caenorhabditis elegans Hypothetical
protein C14A4.1 protein.
Length = 298
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 70 LKERNMLYT----MEHECNERVRLFPNPERIDKVEESMNNIESVIRE 112
LK+R +L T + HEC E + N E + +++ +N+ E V+RE
Sbjct: 230 LKDRLLLSTENCMVRHECAEALGAIANEECTEILKQYVNDEERVVRE 276
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 179 LYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMP 238
L+ +++H + N F + LL++ + +D LK YPNV E+ ++ H+
Sbjct: 288 LHTQQLHYKELDLINLQFEYFGELLQQTLS-GLDYLKQYYPNVGFEEVHSKVRNLTHYFL 346
Query: 239 TY 240
Y
Sbjct: 347 YY 348
>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
protein C25F9.2 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 145 PSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNE------KIHSEVRKAHNRDFNH 198
P YD K + T R Y F+NS V +F + Y E K+H E+ K D
Sbjct: 797 PQNYD--KILPTLPPREYYAPKFMNSDTVLEFEKWYTENYNNGFKLHDELLKYCRSDVRI 854
Query: 199 VQHLLKRFPNLDMDTLKAEYPNVD 222
+ L RF + +T P V+
Sbjct: 855 LVLTLVRFIKMCQNTFNDWNPLVN 878
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 175 KFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEK 225
K+R LYNEK+ + + NR ++H LK + D+ K + EK
Sbjct: 797 KYRNLYNEKL-TAISDKENRSQIEMEHKLKNAES-DLQEAKRRAEEIGAEK 845
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 175 KFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEK 225
K+R LYNEK+ + + NR ++H LK + D+ K + EK
Sbjct: 809 KYRNLYNEKL-TAISDKENRSQIEMEHKLKNAES-DLQEAKRRAEEIGAEK 857
>AF025453-1|AAK31407.1| 520|Caenorhabditis elegans Hypothetical
protein C08F1.4a protein.
Length = 520
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 16 KRDFHTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELR 55
+R F+ T ++ F D +K W T +R W++ R
Sbjct: 192 ERCFYITCKVNNVSRFQDGEKQWGNTELRYDIPWRIQTKR 231
>Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 94 ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINL-IGMPEEYQPSEYDTPK 152
++I+K E+ + ++E I + I+Y KLET + +V+ L + ++ EY+ K
Sbjct: 464 KKIEKSEKRLYDLERRINKVKISYGKLETHSDKYKEANEVVFLPTTLLQDVLAQEYEVAK 523
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 94 ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINL-IGMPEEYQPSEYDTPK 152
++I+K E+ + ++E I + I+Y KLET + +V+ L + ++ EY+ K
Sbjct: 464 KKIEKSEKRLYDLERRINKVKISYGKLETHSDKYKEANEVVFLPTTLLQDVLAQEYEVAK 523
>U88184-14|AAK31520.1| 821|Caenorhabditis elegans Hypothetical
protein F36H5.1 protein.
Length = 821
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 16 KRDFHTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELR 55
+R F+ + ++ F D +K W T +R W++ R
Sbjct: 422 ERSFYISCKVNNVSRFLDDEKQWGNTELRYEIPWRIQAKR 461
>U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical
protein C41A3.2a protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 80 EHECNERVR--LFPNPERIDKVEESMNNIESVIRERNIAY 117
E + +R R P+P RI ++ +S + + IRE++IAY
Sbjct: 506 ERDAQKRARRGYGPDPTRIKEMLKSRDRLSEHIREKDIAY 545
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,518,188
Number of Sequences: 27539
Number of extensions: 290834
Number of successful extensions: 912
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 31
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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