Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07830.1 68414.m00849 ribosomal protein L29 family protein si...    91   5e-19
At1g04590.1 68414.m00452 expressed protein isoform contains GG a...    33   0.23 
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    31   0.70 
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    31   0.92 
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    29   2.1  
At1g66750.1 68414.m07587 cell division protein kinase, putative ...    29   2.8  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    29   2.8  
At2g25340.1 68415.m03031 synaptobrevin family protein similar to...    28   4.9  
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family...    28   4.9  
At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l...    28   4.9  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   6.5  
At2g41710.2 68415.m05155 ovule development protein, putative sim...    27   8.6  
At2g41710.1 68415.m05154 ovule development protein, putative sim...    27   8.6  
At1g17540.1 68414.m02157 protein kinase-related similar to serin...    27   8.6  

>At1g07830.1 68414.m00849 ribosomal protein L29 family protein
           similar to GB:CAA83057 from [Saccharomyces cerevisiae]
          Length = 144

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 53/115 (46%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 2   RSQKSINTAAACIVKRDFHTTKPTQDLMEFFDAKKNWPETN-IRVGRAWKLDELRLKSNT 60
           RS+ +   AAA  ++       PT  L EFF+  ++  E   +  GR WK  ELRLKS  
Sbjct: 18  RSESTTAAAAASTIRT------PTNPLEEFFEFDRSQDEDKPVVYGRGWKASELRLKSWD 71

Query: 61  DLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNI 115
           DL KLWYVLLKE+NML T       +   FPNPERI KV  SM  I+ V+ ER I
Sbjct: 72  DLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHVLTERAI 126


>At1g04590.1 68414.m00452 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 381

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 55  RLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERN 114
           R K   DLH + + L  +   +Y   +   E V+LF + E  D+     + +++V     
Sbjct: 238 RKKVGNDLHSVPWQLCLQMMRIYFRNNMLQELVKLFKDLESYDRKPPDKHIVQTVAD--- 294

Query: 115 IAYYKLETGETGERPVKDVIN-LIGMPEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAV 173
            AY  L   +  ER V    + L+G P + +PS     K      +      G +++   
Sbjct: 295 -AYELLGMLDEKERVVTKYSHLLLGTPSDDKPSRSSRKKKKPELRIPEATTEGAVDAAKA 353

Query: 174 K-KFRRLYNEKIHSEVRKAHNRDFNH 198
           + +  R  N   H E   A  + F H
Sbjct: 354 EIQEERKENLDNHQESEAATEKQFEH 379


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 94  ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEEYQPSEYD 149
           ER+ K+E  ++ ++   +E N+ + K ++  T  R  K+ I+ + +  E    EYD
Sbjct: 520 ERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAEREYD 575


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 44  RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERID 97
           R   A++L  L +K++   H  W+VL     +LY  + E  E ++ + N  RID
Sbjct: 58  RKTEAYELVRLGVKNDIKSHVCWHVL----GLLYRSDREYREAIKCYRNALRID 107


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 136 LIGMPEEY---QPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAH 192
           ++G+P E    +P      + MN  +V  Y K  F+N LA  K  + Y++       K +
Sbjct: 279 ILGLPSEQTFSKPELRRAEELMNRAFVEFYQKLSFLNQLAFAKILKKYDKTTSRNASKPY 338

Query: 193 NRDFNH 198
               +H
Sbjct: 339 LNTVDH 344


>At1g66750.1 68414.m07587 cell division protein kinase, putative
           similar to cell division protein kinase 7 [Homo sapiens]
           SWISS-PROT:P50613
          Length = 348

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 41  TNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEH-ECNERVRLFPNPERIDKV 99
           T+ + G+   + ++RL +  +   + +  L+E  +L  + H    E +  FP+   +  V
Sbjct: 31  TDTKTGKTVAVKKIRLGNQKE--GVNFTALREIKLLKELNHPHIVELIDAFPHDGSLHLV 88

Query: 100 EESMN-NIESVIRERNI 115
            E M  ++E+VIR+RNI
Sbjct: 89  FEYMQTDLEAVIRDRNI 105


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 63   HKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERN-IAYYKLE 121
            H++W+  L+E + LY  EH     +++   P   D ++E +    + I+ER  I  Y+ E
Sbjct: 1929 HEMWHEALEEASRLYFGEHNIEGMLKVL-EPLH-DMLDEGVKKDSTTIQERAFIEAYRHE 1986

Query: 122  TGETGE 127
              E  E
Sbjct: 1987 LKEAHE 1992


>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
           Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
          Length = 219

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 91  PNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEEYQPSEYDT 150
           PN + I +++  MN +  V+ E NI    L+ GE  E  V    N+ G    ++     T
Sbjct: 122 PNADTISRIKGEMNQVRDVMIE-NIDNI-LDRGERLELLVDKTANMQGNTFRFRK---QT 176

Query: 151 PKFMNTRWVR 160
            +F NT W R
Sbjct: 177 RRFNNTVWWR 186


>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 561

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 91  PNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEEYQPSEYDT 150
           P PE +D+ E+  N   S +R       K+E   T E  V + + +   P  Y PS   +
Sbjct: 210 PPPEDVDQTEDGDNGEGSKVRNGGSETEKVEVVATAEAEVVEELKVPSAP-PYIPSPPPS 268

Query: 151 P 151
           P
Sbjct: 269 P 269


>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
           protein [Arabidopsis thaliana] GI:12006422; contains
           Pfam profiles: PF02197 Regulatory subunit of type II PKA
           R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
           PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
           PF03730: Ku70/Ku80 C-terminal arm
          Length = 680

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 67  YVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNI 115
           + L +ERN+ + +EH  ++++ L P  E  D      N  + ++++ ++
Sbjct: 629 FKLCQERNLSHLLEHFMSKKITLIPKSEAADSDIVDENAGDFIVKQESM 677


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 151 PKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHN 193
           P+FM+  W RPYL   F  ++  KK ++   E   SE +K ++
Sbjct: 21  PRFMHLSWKRPYLTRVFDLAVIQKKQKK---EMSDSEEKKCND 60


>At2g41710.2 68415.m05155 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 428

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 94  ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPV 130
           E++ K++ES NN       RNI   +   G+  E+PV
Sbjct: 315 EKVLKIQESCNNENDENANRNIINMEKNNGKAIEKPV 351


>At2g41710.1 68415.m05154 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 423

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 94  ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPV 130
           E++ K++ES NN       RNI   +   G+  E+PV
Sbjct: 310 EKVLKIQESCNNENDENANRNIINMEKNNGKAIEKPV 346


>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 28  LMEFFDAK-KNWPE--TNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECN 84
           L E  D K  +WPE  T +    A +  ELR K   DL  +    L +     T +HE +
Sbjct: 639 LREVLDPKISDWPEEETMVLAQLALQCCELRKKDRPDLASVLLPALSKLREFATEDHEVH 698

Query: 85  ERVRLF 90
              R F
Sbjct: 699 NSDRTF 704


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,103,996
Number of Sequences: 28952
Number of extensions: 266720
Number of successful extensions: 646
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 12,070,560
effective HSP length: 79
effective length of query: 161
effective length of database: 9,783,352
effective search space: 1575119672
effective search space used: 1575119672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)