Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151... 84 8e-17
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737... 33 0.27
07_01_0665 + 5001599-5003149 30 1.5
03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621 30 1.5
07_03_1788 + 29523216-29524867,29525048-29525075 30 1.9
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 5.9
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 28 7.8
>06_01_0195 +
1512978-1513207,1513938-1513945,1514040-1514197,
1514990-1515097
Length = 167
Score = 84.2 bits (199), Expect = 8e-17
Identities = 40/72 (55%), Positives = 50/72 (69%)
Query: 45 VGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMN 104
+GR+WK ELRLKS DL KLWYVLLKE+NML + + FPNPER+ KV++SM
Sbjct: 79 LGRSWKASELRLKSWDDLQKLWYVLLKEKNMLMSQRQMLHSENMRFPNPERVSKVKKSMC 138
Query: 105 NIESVIRERNIA 116
I+ V+ ER IA
Sbjct: 139 RIKHVLTERAIA 150
>12_01_0805 -
7378364-7378435,7378534-7378616,7378843-7379020,
7379822-7379977,7380205-7380308,7381653-7381695,
7382142-7382234,7382391-7382686,7382795-7382942,
7383577-7383615
Length = 403
Score = 32.7 bits (71), Expect = 0.27
Identities = 45/204 (22%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 43 IRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEE- 101
I+V + ++++ ++ N+ L W+ L N Y+ + + +R + + V+E
Sbjct: 193 IQVRPSAQIEQKKIVKNSTLIINWHTLSDADNGKYSEDEDDYKRSHKYLMKGKYKVVDEH 252
Query: 102 SMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEEYQPSEYDTPKFMNTRWVRP 161
S NNI+S I R+ +L+T + + I E P + D F+ + +
Sbjct: 253 SYNNIQSAITLRDTIVRRLDTWLQQHQDIASTI------EALLPFQNDLDDFILEK-MND 305
Query: 162 YLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQ-HLLKRFPNLDM-DTLKAEYP 219
L ++ + VK+ L ++ E ++A R ++ +K F NLD+ T K +
Sbjct: 306 ML--SVVHRMLVKRKGTLKGSQVFEENKRACLRQEPAIESSQIKDFSNLDIFTTTKHQIL 363
Query: 220 N---VDIEKAKRTKKSRGHFMPTY 240
N V +A T++S+ + +P++
Sbjct: 364 NTSQVSQNEAVITQQSQVNALPSF 387
>07_01_0665 + 5001599-5003149
Length = 516
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 26 QDLMEFFDAKKNWPETNIRVGRAWK 50
+D+M+ DA +N E RVGRAWK
Sbjct: 241 KDIMDDLDAFRNGKEYYARVGRAWK 265
>03_03_0194 +
15319764-15319982,15320377-15320481,15320523-15320621
Length = 140
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 44 RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLF 90
+ G +W L +R + WY L K R + + HEC+E V +F
Sbjct: 20 KFGTSWYLSNMRYHEVPKFYTSWY-LFKNRRI--ALNHECSEVVMVF 63
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 157 RWVRPYLKHGFINSLAVKKFRRL-YNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLK 215
R RP+L FI L R+ ++ ++H+ V KAH R F+ + L P+ TL
Sbjct: 153 RIARPFLPRDFIALLHDLAAHRMGFSNRVHAAVAKAHLRAFDKFRGL----PDPPEYTLH 208
Query: 216 AEYPNVDIEKA 226
PNV A
Sbjct: 209 LGLPNVSAAAA 219
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 44 RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERID 97
R A++L LK++ H W+V +LY + E E ++ + N RID
Sbjct: 58 RKSEAYELVRRGLKNDLKSHVCWHVY----GLLYRSDREYREAIKCYRNALRID 107
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 62 LHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLE 121
LH+ VLLKE+ +L + ER+ + E+ +VEE N +E+ + YKLE
Sbjct: 239 LHEKEEVLLKEQALLNQRDENILERLAYVTHSEK--RVEEEKNILEAERKVLLEEKYKLE 296
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,164,530
Number of Sequences: 37544
Number of extensions: 297569
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 7
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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