Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
(240 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089479-1|AAL90217.1| 271|Drosophila melanogaster AT29239p pro... 257 9e-69
AE014297-955|AAO41525.1| 271|Drosophila melanogaster CG9378-PB,... 257 9e-69
AE014297-956|AAF54390.2| 227|Drosophila melanogaster CG9378-PA,... 210 1e-54
X73219-1|CAA51687.1| 181|Drosophila melanogaster Rlc1 protein. 152 5e-37
X73218-1|CAA51686.1| 181|Drosophila melanogaster Rlc1 protein. 152 5e-37
X73217-1|CAA51685.1| 181|Drosophila melanogaster Rlc1 protein. 152 5e-37
AY060744-1|AAL28292.1| 365|Drosophila melanogaster GH19655p pro... 31 1.9
AE014298-1523|AAF47974.1| 365|Drosophila melanogaster CG15208-P... 31 1.9
BT011201-1|AAR88565.1| 649|Drosophila melanogaster GH04118p pro... 29 7.6
AJ133103-1|CAB63452.1| 897|Drosophila melanogaster RFX transcri... 29 7.6
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like... 29 7.6
AE014297-1144|AAF54526.2| 897|Drosophila melanogaster CG6312-PA... 29 7.6
AE014135-201|AAF59381.4| 649|Drosophila melanogaster CG17461-PA... 29 7.6
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA... 29 7.6
>AY089479-1|AAL90217.1| 271|Drosophila melanogaster AT29239p
protein.
Length = 271
Score = 257 bits (630), Expect = 9e-69
Identities = 114/219 (52%), Positives = 159/219 (72%), Gaps = 2/219 (0%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51 HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHV 199
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA NR N V
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKAKNRSRNEV 228
Query: 200 QHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMP 238
+L+R PN D+D L+ ++P+V+++K + K RGH++P
Sbjct: 229 MMILRRNPNFDLDVLRRQFPDVNVDKLRNEDKIRGHYVP 267
>AE014297-955|AAO41525.1| 271|Drosophila melanogaster CG9378-PB,
isoform B protein.
Length = 271
Score = 257 bits (630), Expect = 9e-69
Identities = 114/219 (52%), Positives = 159/219 (72%), Gaps = 2/219 (0%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51 HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHV 199
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA NR N V
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKAKNRSRNEV 228
Query: 200 QHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMP 238
+L+R PN D+D L+ ++P+V+++K + K RGH++P
Sbjct: 229 MMILRRNPNFDLDVLRRQFPDVNVDKLRNEDKIRGHYVP 267
>AE014297-956|AAF54390.2| 227|Drosophila melanogaster CG9378-PA,
isoform A protein.
Length = 227
Score = 210 bits (513), Expect = 1e-54
Identities = 95/172 (55%), Positives = 127/172 (73%), Gaps = 2/172 (1%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51 HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 191
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 220
>X73219-1|CAA51687.1| 181|Drosophila melanogaster Rlc1 protein.
Length = 181
Score = 152 bits (368), Expect = 5e-37
Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRA + + NML TM
Sbjct: 6 HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 65 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 191
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174
>X73218-1|CAA51686.1| 181|Drosophila melanogaster Rlc1 protein.
Length = 181
Score = 152 bits (368), Expect = 5e-37
Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRA + + NML TM
Sbjct: 6 HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 65 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 191
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174
>X73217-1|CAA51685.1| 181|Drosophila melanogaster Rlc1 protein.
Length = 181
Score = 152 bits (368), Expect = 5e-37
Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 20 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 79
HT+ +DLMEFFD KKNW E ++VGRA + + NML TM
Sbjct: 6 HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64
Query: 80 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 139
EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N G+
Sbjct: 65 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124
Query: 140 PEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 191
Y+ E+ P FMN +W++ ++ AV +F Y EK+++ RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174
>AY060744-1|AAL28292.1| 365|Drosophila melanogaster GH19655p
protein.
Length = 365
Score = 30.7 bits (66), Expect = 1.9
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 47 RAWKLDELRLKSN--TDLHKLWYVL-LKERNMLYTMEHEC------NER---VRLFPNPE 94
R +L EL L+ N D +L Y++ K L+ +++ C N R +R+ PN +
Sbjct: 62 RCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNPCSIAAGSNYRASVLRMLPNLK 121
Query: 95 RIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVIN 135
++D V+ + +ES +R YY + G PV D+ N
Sbjct: 122 KLDNVDVAEEELESALR---YDYYP-DVGSAILNPVLDLSN 158
>AE014298-1523|AAF47974.1| 365|Drosophila melanogaster CG15208-PA
protein.
Length = 365
Score = 30.7 bits (66), Expect = 1.9
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 47 RAWKLDELRLKSN--TDLHKLWYVL-LKERNMLYTMEHEC------NER---VRLFPNPE 94
R +L EL L+ N D +L Y++ K L+ +++ C N R +R+ PN +
Sbjct: 62 RCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNPCSIAAGSNYRASVLRMLPNLK 121
Query: 95 RIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVIN 135
++D V+ + +ES +R YY + G PV D+ N
Sbjct: 122 KLDNVDVAEEELESALR---YDYYP-DVGSAILNPVLDLSN 158
>BT011201-1|AAR88565.1| 649|Drosophila melanogaster GH04118p
protein.
Length = 649
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 168 INSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNL 209
+ LA+ + +YNE+I + K N + N + H LK P +
Sbjct: 128 VRYLALVTYLEIYNERIRDLLNK--NENTNVINHFLKELPGI 167
>AJ133103-1|CAB63452.1| 897|Drosophila melanogaster RFX
transcription factor protein.
Length = 897
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 163 LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 206
L H F + L V FR LY E S + N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587
>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
kinetochore motorprotein CENP-meta protein.
Length = 2244
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 74 NMLYTMEHECNERVRLFPNPER-IDKVEESMNNIESVIRERNIAYYKLE 121
+++ +E E E+ L E I+++ E M N+ES + E+++ K+E
Sbjct: 1015 DIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKVE 1063
>AE014297-1144|AAF54526.2| 897|Drosophila melanogaster CG6312-PA
protein.
Length = 897
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 163 LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 206
L H F + L V FR LY E S + N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587
>AE014135-201|AAF59381.4| 649|Drosophila melanogaster CG17461-PA
protein.
Length = 649
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 168 INSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNL 209
+ LA+ + +YNE+I + K N + N + H LK P +
Sbjct: 128 VRYLALVTYLEIYNERIRDLLNK--NENTNVINHFLKELPGI 167
>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
protein.
Length = 2013
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 74 NMLYTMEHECNERVRLFPNPER-IDKVEESMNNIESVIRERNIAYYKLE 121
+++ +E E E+ L E I+++ E M N+ES + E+++ K+E
Sbjct: 1015 DIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKVE 1063
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,777
Number of Sequences: 52641
Number of extensions: 549985
Number of successful extensions: 1607
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 17
length of query: 240
length of database: 24,830,863
effective HSP length: 83
effective length of query: 157
effective length of database: 20,461,660
effective search space: 3212480620
effective search space used: 3212480620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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