GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000440-TA|BGIBMGA000440-PA|IPR010729|Ribosomal protein
L47, mitochondrial, IPR001854|Ribosomal protein L29
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.15 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 126 GERPVKDVINLIGMPEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLY 180
           G   + DVI +I    +Y   E   P+ MNT  + PY++   I   A K  R  Y
Sbjct: 10  GNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE--IIEQPASKALRFRY 62


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 126 GERPVKDVINLIGMPEEYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLY 180
           G   + DVI +I    +Y   E   P+ MNT  + PY++   I   A K  R  Y
Sbjct: 10  GNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE--IIEQPASKALRFRY 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 32   FDAKKNWPETNIRVGRAWKLDELRL-KSNTDLHKLWYVLLKERNM-LYTMEHECNER-VR 88
            FD K ++P   +R+G  W        + N D H     + K++++ + + E+E  ++ V+
Sbjct: 1454 FDGK-DYP---LRLGPCWHAVMTTYPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEVK 1509

Query: 89   LFPNPERIDKVE------ESMNNIESVIRERNIAYYKLETGE 124
            +    ++I  V       E   N E ++  RN AY K+E  E
Sbjct: 1510 VLLGSDKIKFVPGTTSQPEVFVNGEKIVVSRNKAYQKVEENE 1551


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 51   LDELRLKSNTDLHKLWYVLLKERNMLYTMEH 81
            LDEL+L  +   H+L  +L      LY   H
Sbjct: 1448 LDELQLSRHATSHELKGLLCGNTYQLYLTSH 1478


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 51   LDELRLKSNTDLHKLWYVLLKERNMLYTMEH 81
            LDEL+L  +   H+L  +L      LY   H
Sbjct: 1444 LDELQLSRHATSHELKGLLCGNTYQLYLTSH 1474


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,568
Number of Sequences: 429
Number of extensions: 3773
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)