Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000439-TA|BGIBMGA000439-PA|IPR001107|Band 7 protein,
IPR001972|Stomatin
         (257 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)               158   4e-39
SB_31051| Best HMM Match : Band_7 (HMM E-Value=5e-14)                 122   4e-28
SB_32267| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     28   6.6  

>SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)
          Length = 152

 Score =  158 bits (384), Expect = 4e-39
 Identities = 78/149 (52%), Positives = 100/149 (67%)

Query: 88  AVVRVADYSASTRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVER 147
           ++  V + +ASTRLLA TTLRN LG ++L ++LS R+ IS  MQ+SLDEAT+PWGV+VER
Sbjct: 2   SITNVENANASTRLLAQTTLRNTLGTKNLTEILSQRDEISQTMQSSLDEATDPWGVKVER 61

Query: 148 VEIKDVRLPVQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLR 207
           +E+KDVRLP QLQ                             LKEAS ++ ++P ALQLR
Sbjct: 62  IEVKDVRLPQQLQRAMAAEAEATREARAKIIAAEGEMNASRSLKEASDIISESPQALQLR 121

Query: 208 YLQSLSSISAEKNSTIIFPFPMDFLKAFL 236
           YLQ+L++ISAEKNSTIIFP P+DFL   L
Sbjct: 122 YLQTLTTISAEKNSTIIFPLPIDFLSKLL 150


>SB_31051| Best HMM Match : Band_7 (HMM E-Value=5e-14)
          Length = 217

 Score =  122 bits (293), Expect = 4e-28
 Identities = 57/94 (60%), Positives = 75/94 (79%)

Query: 38  FFVLPCIDTYRKVDLRTVSFDVPPQEVLTRDSVTVAVDAVVYYRIKEPLNAVVRVADYSA 97
           FFVLPCID +RKVD+RTVSFDVPPQEVLT+DSVTV VDAVVY+R++    ++  V +   
Sbjct: 61  FFVLPCIDEFRKVDIRTVSFDVPPQEVLTKDSVTVTVDAVVYFRVENATVSITNVENAFG 120

Query: 98  STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQ 131
           ST+LLA TTLRN++G + L ++LS+R+ IS  M+
Sbjct: 121 STKLLAQTTLRNMMGSKLLCEILSERDNISATMK 154



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 190 LKEASLVMIDNPMALQLRYLQSLSSISAEKNSTIIFPFPMDFLKAFL 236
           LK A+ V+  +P ALQLRYLQ+L++ISAEKNSTIIFP PM+ L  F+
Sbjct: 168 LKNAAEVLDGSPSALQLRYLQTLNTISAEKNSTIIFPLPMNLLNRFM 214


>SB_32267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/47 (65%), Positives = 41/47 (87%)

Query: 190 LKEASLVMIDNPMALQLRYLQSLSSISAEKNSTIIFPFPMDFLKAFL 236
           LKEAS ++ ++P ALQLRYLQ+L++ISAEKNSTIIFP P+DF+  F+
Sbjct: 14  LKEASDIISESPQALQLRYLQTLTTISAEKNSTIIFPLPIDFIAKFI 60


>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 9/124 (7%)

Query: 39  FVLPCIDTYRKVDLRTVSFDVPPQEVLTRDSVTVAVDAVVYYRIK-EPLNAVVRVADY-S 96
           F   C+   + + L  ++ +   + V T   V V V  V   ++  EP         +  
Sbjct: 317 FAWACVTDVQSISLEVMTLNPTCEAVETAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLG 376

Query: 97  ASTRLLAATTL-------RNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVE 149
            +TR + +  L       R +LG   + ++  DREA + +++          G+E+    
Sbjct: 377 KTTRQIESVVLQTLEGHLRAILGTLSVEEIYKDREAFAALVREVASPDVGRMGIEILSFT 436

Query: 150 IKDV 153
           IKD+
Sbjct: 437 IKDI 440


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 207 RYLQSLSSISAEKNSTIIFPFPMDFLKAFLGGAGPSTTHQPSVQMTQS 254
           R L S SS S E  S+ +F FP   +      +GP +T   +V +T S
Sbjct: 205 RVLPSASSGSTEVYSSALFTFPSSMVATSHALSGPGSTLSRTVVLTLS 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,575,747
Number of Sequences: 59808
Number of extensions: 155198
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 16,821,457
effective HSP length: 81
effective length of query: 176
effective length of database: 11,977,009
effective search space: 2107953584
effective search space used: 2107953584
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)