GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000439-TA|BGIBMGA000439-PA|IPR001107|Band 7 protein,
IPR001972|Stomatin
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    74   2e-14
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    27   2.0  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.2  

>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 39  FVLPCIDTYRKV-DLRTVSFDVPPQEVLTRDSVTVAVDAVVYYRIKEPLNAVVRVADYSA 97
           F+ P ID    +  L+  + ++P Q  +T D+V++ +D V+Y ++ +P  A   V D   
Sbjct: 80  FLAPIIDKIAYIHSLKERALEIPTQSAITLDNVSLGLDGVLYIQVYDPYKASYGVEDADY 139

Query: 98  STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLP 156
           +   LA TT+R+ +G   L  +L +R++++  +  ++++A E WG+   R EI+D+R P
Sbjct: 140 AISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAINKAAESWGIRCLRHEIRDIRPP 198


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 78  VYYRIKEPLNAVVRVADYSASTRLLAATTLRNVLGMRDLAQLLSDR 123
           + YR+K+P+  +  VA +     L     L+  +  R+L  L  DR
Sbjct: 765 ISYRLKQPVAFIPHVAQWFQGITLTINVPLKKSITSRELRNLYQDR 810


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 207 RYLQSLSSISAEKNSTIIFPFPMDFLKAFLGGA 239
           R++  L +IS +KN   I+  P     A+LGG+
Sbjct: 317 RFISELRAISGKKNQVKIYASPERMHNAWLGGS 349


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 95   YSASTRLLAATTLRN--VLGMRDLAQLLSDREA---ISHMMQASLDEATE 139
            Y+++T+ L    +RN   LG++  A+ L D+     +S+ +Q S+DEAT+
Sbjct: 1356 YTSATQYLEEA-IRNYAALGVKQKARHLRDKFGDLLVSNNLQVSIDEATQ 1404


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 206  LRYLQSLSSISAEKNSTIIFPFPMDFLKAFLGGAG 240
            LR  + ++S+ A   S I FPF ++ +  F  G G
Sbjct: 1283 LRLFEKVTSMGASVFSPIEFPFVLELIGEFYYGRG 1317


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,731
Number of Sequences: 5004
Number of extensions: 24073
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 5
length of query: 257
length of database: 2,362,478
effective HSP length: 71
effective length of query: 186
effective length of database: 2,007,194
effective search space: 373338084
effective search space used: 373338084
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)