Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000439-TA|BGIBMGA000439-PA|IPR001107|Band 7 protein,
IPR001972|Stomatin
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0384 + 3414291-3414508,3414509-3414755,3415864-3416013,341... 69 3e-12
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 31 0.69
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 30 2.1
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 29 2.8
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 29 2.8
01_06_0011 - 25559099-25559238,25559781-25559814,25560172-255603... 29 2.8
01_05_0522 - 22910849-22911399,22911797-22912181 29 3.7
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251 29 3.7
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 29 4.9
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 29 4.9
>08_01_0384 +
3414291-3414508,3414509-3414755,3415864-3416013,
3416419-3416476,3416556-3416648,3416775-3416807,
3417357-3417448,3417544-3417603,3417729-3417995
Length = 405
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 40 VLPCIDTYRKV-DLRTVSFDVPPQEVLTRDSVTVAVDAVVYYRIKEPLNAVVRVADYSAS 98
++P +D V L+ + +P Q +T+D+V++ +D V+Y +I +P A V + +
Sbjct: 113 LVPLVDRIAYVHSLKEEAIPIPDQSAITKDNVSIQIDGVLYVKIVDPYLASYGVENPIFA 172
Query: 99 TRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLP 156
LA TT+R+ LG L + +R+ ++ + S++EA WG++ R EI+D+ P
Sbjct: 173 VIQLAQTTMRSELGKITLDKTFEERDTLNEQIVRSINEAATDWGLKCLRYEIRDISPP 230
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 31.5 bits (68), Expect = 0.69
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 4 FNAIFYNQVVQEFERAVIFXXXXXXXXXXXXXXXFFVLPCIDTYRKVDLRTVSFDVPPQE 63
FN++ YN V+ RA++F F++P + D+R ++
Sbjct: 28 FNSL-YN--VEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARP-NLVEST 83
Query: 64 VLTRDSVTVAVDAVVYYR-IKEPLNAVVRVADYSASTRLLAAT---TLRNVLGMRDLAQL 119
+RD V + V R + E L + R + + R+L + TL+ V+ + +QL
Sbjct: 84 SGSRDLQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQL 143
Query: 120 LSDREAISHMMQASLDEATEPWGVEVERVEI 150
++ REA+S ++ L E + + ++ V I
Sbjct: 144 ITQREAVSREIRKILTERASNFNIALDDVSI 174
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 66 TRDSVTVAVDAVVYYR-IKEPLNAVVRVADYSASTRLLAAT---TLRNVLGMRDLAQLLS 121
+RD V + V R + E L + R + + R+L + TL+ V+ + +QL++
Sbjct: 251 SRDLQMVKIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLIT 310
Query: 122 DREAISHMMQASLDEATEPWGVEVERVEI 150
REA+S ++ L E + + ++ V I
Sbjct: 311 QREAVSREIRKILTERASNFNIALDDVSI 339
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 63 EVLTRDSVTVAVDAVVYYRIKE--PLNAVVRVADYSASTRLLAATTLRNVLGMRDLAQLL 120
E T+D+V V V A + YR E +A ++++ + + +R + +L
Sbjct: 66 ETKTKDNVFVTVVASIQYRAMEDKASDAYYKLSNPKSQIQSYVFDVIRASIPKLELDDAF 125
Query: 121 SDREAISHMMQASLDEATEPWGVEVERVEIKDV 153
+ I+ ++ L++A +G E+ + I D+
Sbjct: 126 LQKNEIARAVEEELEKAMLAYGYEIVQTLIVDI 158
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 50 VDLRTVSFDVPPQEVLTRDSVTVAVDAVVYYR--IKEPLNAVVRVADYSASTRLLAATTL 107
+ LR DV E T+D+V V V A V YR + +A ++++ + +
Sbjct: 92 LSLRVKQLDVRC-ETKTKDNVFVTVVASVQYRALADKASDAFYKLSNTREQIQSYVFDVI 150
Query: 108 RNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPVQLQ 160
R + +L + I+ ++ L++A +G E+ + I D+ V ++
Sbjct: 151 RATVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIIDIEPDVHVK 203
>01_06_0011 -
25559099-25559238,25559781-25559814,25560172-25560333,
25560335-25560454
Length = 151
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 42 PCIDTYRKV-DLRTVSFDVPPQEVLTRDSVTVAVDAVVYYR 81
P +D V L+ + +P Q +T+D++++ +D V+Y +
Sbjct: 54 PLVDHIAYVHSLKEEAIPIPDQSAITKDNISIQIDGVLYVK 94
>01_05_0522 - 22910849-22911399,22911797-22912181
Length = 311
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 50 VDLRTVSFDVPPQEVLTRDSVTVAVDAVVYYR--IKEPLNAVVRVADYSASTRLLAATTL 107
+ LR DV E TRD+V V V A V YR +A + + A + +
Sbjct: 72 LSLRVQQLDVRC-ETKTRDNVFVTVVASVQYRALADRAYDAFYCLTNAHAQIQSYVFDVI 130
Query: 108 RNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDV 153
R + +L ++ ++ ++ ++ L A +G E+ + I D+
Sbjct: 131 RASVPNMNLDEVFGQKKEVARAVEEELARAMTMYGYEIVQTLIVDI 176
>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
Length = 349
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 212 LSSISAEKNSTIIFP-FPMDFLKAFLGGAGPSTTHQPSVQMTQSLPI 257
+ S+S FP F ++ + GG G ++ HQPS Q+ + PI
Sbjct: 128 MPSVSGGMRGDPRFPGFGNEYFSSRFGGEGSTSMHQPSHQLAKPPPI 174
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 66 TRDSVTVAVDAVVYYR-IKEPLNAVVRVADYSASTRLLAAT---TLRNVLGMRDLAQLLS 121
+RD V + V R + E L + R + + R+L + TL+ V+ + +QL++
Sbjct: 164 SRDLQMVKIGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLIT 223
Query: 122 DREAISHMMQASLDEATEPWGVEVERVEI 150
RE +S ++ L E + + ++ V I
Sbjct: 224 QRETVSREIRKILTERARNFNIALDDVSI 252
>01_01_0962 +
7570490-7570796,7571984-7572540,7572702-7572749,
7572841-7573789,7574573-7575528
Length = 938
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 104 ATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDV 153
A LR +GM D+ L D E + A L+E E G V R+ + DV
Sbjct: 877 AKRLRMDVGMFDIKYLDDDHEWVKLACNADLEECMEISGSHVIRLLVSDV 926
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.135 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,999,354
Number of Sequences: 37544
Number of extensions: 142949
Number of successful extensions: 339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 10
length of query: 257
length of database: 14,793,348
effective HSP length: 81
effective length of query: 176
effective length of database: 11,752,284
effective search space: 2068401984
effective search space used: 2068401984
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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