Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000438-TA|BGIBMGA000438-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    30   0.29 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.7  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.2  

>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 51  EDVKVRQPTTHKYQGVHYPVHYPA-PVQHEAPAAKPVYKP 89
           ED  +  P + K Q V  P H P  PVQ+ +   KP+  P
Sbjct: 93  EDPSLNAPFSEKNQSVKIPPHSPTLPVQNASAFVKPISVP 132


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 58  PTTHKYQGVHYPVHYPAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRG 105
           P  H   G H P   P P+ HE     P    + H     EG   HRG
Sbjct: 314 PPMHHEPGEHMP---PPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRG 358


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 69  PVHYPAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRGVHLE 109
           PV  PAP    APAA+ V     +  +     SFH G  +E
Sbjct: 395 PVPPPAPAPAAAPAAEHVVALYDYAAQAAGDLSFHAGDRIE 435


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 17  MLAKSIIHHAASGQQDSQENSGERGIYQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPV 76
           M+     +HA S  Q    +S    ++  +    + V +R P   +     YPV  P+P 
Sbjct: 116 MVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQPV-LRPPPVPQVPSHWYPVSLPSPN 174

Query: 77  QHEAPAAKPVYKPQV 91
               P +KP   P +
Sbjct: 175 LPHQPISKPPVIPNL 189


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 24  HHAASGQQDSQENSGERGIYQYVQ-EQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPA 82
           H  ++ +Q S E+S E     Y   E  ED  VRQ TT    G          V H  P 
Sbjct: 932 HSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIPV 991

Query: 83  AKPVYKP 89
           +  +  P
Sbjct: 992 SNGLSSP 998


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,181
Number of Sequences: 5004
Number of extensions: 42779
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)