GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000438-TA|BGIBMGA000438-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      31   0.70 
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  31   0.93 
SB_49477| Best HMM Match : Extensin_2 (HMM E-Value=4.1)                31   0.93 
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            30   1.6  
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   2.1  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   3.7  
SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)                    29   3.7  
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   28   4.9  
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               27   8.6  

>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 8   RGSRGRKNNMLAKSIIHHAASGQQDSQENSGERGIYQYVQEQNEDVKVRQPTTHKYQGVH 67
           RGSRGR      +       S ++ S+     +G    VQ +  D K ++P   +   + 
Sbjct: 637 RGSRGRSPGRREREGERRPRSAERQSRRQDEPKGEPHVVQPEETDEKSKEPPPTQEPMIE 696

Query: 68  YPVHYPAPVQHEAPAAKPVYKPQVHYTRPQEG 99
                   V   AP A+ V KP   Y+ P  G
Sbjct: 697 IK-REEIHVVLAAPKAEIVDKPPRRYSDPDAG 727


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 44  QYVQEQNEDVKVRQPTTHKYQGV-HYPVHYPAPVQHEAPAAKPVYKPQVHYTRPQEG 99
           Q +Q + +    +Q    +YQ V  Y   YPAP    +P +  VY P      PQ G
Sbjct: 541 QRIQAERQIALEQQQQQLRYQMVPSYGAQYPAPPPDGSPYSSMVYAPPAGVQPPQSG 597


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 24  HHAASGQQDSQENSGERGIYQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPAA 83
           HH    QQ  + +  +R    + +  N     +Q   H Y   H   H     QH+   +
Sbjct: 865 HHQQGKQQHHRLHQQQR----HKKNDNPHQHQQQKQQHGYHHRHQQKHQQKQQQHQRKTS 920

Query: 84  KPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQQ 116
             V   Q H  +  EG   H   HL Q P Y++
Sbjct: 921 NRVSTHQRHEEKDTEGLYIH--AHLHQ-PSYRK 950


>SB_49477| Best HMM Match : Extensin_2 (HMM E-Value=4.1)
          Length = 346

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 13  RKNNMLAKSIIHHAASGQQDSQENSGE---RGIYQYVQEQNEDVKVRQPTTHKYQGVHYP 69
           +KN+   + + H     Q +  E+S     R +Y Y++E     K+RQP T        P
Sbjct: 186 KKNDQPVRKVHHQITYAQPEFVEDSPNPKSRNVYVYLEENGTARKIRQPPT--------P 237

Query: 70  VHYPAPVQHEAPAAKPVYKPQVHYTRPQ 97
           +  P  VQ +A   KP+   Q +   P+
Sbjct: 238 MSAPVLVQ-KARTRKPLKLAQAYTGYPE 264


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 27  ASGQQDSQENSGERGIYQYVQE-QNEDVKVRQPTTHKYQGVH--YPVHYPAPVQHEAPAA 83
           + GQ  S  N  ++       E Q +    + P   +YQ  +  Y   YP P Q + P  
Sbjct: 103 SQGQFSSNANYQQQQASPIQNEFQAKQAFQQYPNYQQYQQQYQQYYHQYP-PYQQQNPGQ 161

Query: 84  KPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQQTEGHAHESHDE 127
            P   P   + +P   F   + V   Q   YQQ E   H SHD+
Sbjct: 162 FPPTAPP-GFNQPPPSFGIGQAVP-GQPQGYQQEENVGHASHDQ 203


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 164  KGVYGLHEADGSVRTVEYSSDKHKGF 189
            KG Y  H+ DG  RT+EY S   +G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 55 VRQPTTHKYQGVHYPVHYPAPVQHEAPAAKP 85
          VR    HK   + Y +H+P+P +H+  AA+P
Sbjct: 19 VRGDVDHKGDFLTYKLHHPSPHRHKRSAAEP 49


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 43  YQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPA---AKPVY-KPQVHYTRPQE 98
           Y Y   Q +      PT   YQ   Y  H+     +E  A   +K  Y +PQ       +
Sbjct: 84  YGYTARQQDAPPPPPPTNTSYQAATYQPHHGTQTFYERDAYDTSKSYYSQPQTSSVPASQ 143

Query: 99  GFSFHRGVHLEQAPVYQQT 117
           G  + +G       VYQ T
Sbjct: 144 GGYYAQGAAASAKAVYQST 162


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 42  IYQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPAAKPVYKP-QVHYTRPQEGF 100
           +Y+  Q +     V QP   + QG H  V Y    Q++  AA P Y+  Q  +   Q+  
Sbjct: 211 LYESPQPEKTQPPVEQPAHFQAQGQHPAVSY----QNQQQAAPPQYQQIQATHQPTQQQT 266

Query: 101 SFHRGVHLEQAPVYQQTEGHAHESHDEP 128
            F +  H +   ++     H  +S ++P
Sbjct: 267 FFQQQGHQQPGNIFDNPPFHP-QSPNQP 293


>SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)
          Length = 614

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 29  GQQDSQENSGERGIYQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPAAKP-VY 87
           G  DS+ +S      + + EQ ED K     T   +    P       + + PA KP V 
Sbjct: 393 GTPDSKRSSNRISYCERIAEQQEDEKEEGEQTALLEPEKIPPPVKPKPKRQKPAPKPDVT 452

Query: 88  KPQVHYTRPQ---EGFSFHRGVHLEQAPVYQQTEGHAHESHDE 127
                  +P+   E    H+  H  + PV++     A   HDE
Sbjct: 453 SENTSANKPEVTTEPEVQHK-AHEHETPVHEPEVTIAEVHHDE 494


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 2   LIHQFHRGSRGRKNNMLAKSIIHHAASGQQDSQENSGERGIYQYVQEQNEDVKVRQPTTH 61
           +IH+    +  R+  M A S  H  A+ Q  S + S  +  + + + Q++  +  +  T+
Sbjct: 93  MIHEDLPVAHQRQGVMEALSAAHQMAASQNKSDKGSKVKPQHGH-KSQSQRSRKGKTKTY 151

Query: 62  KYQGVHYPVHYPAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQQTE 118
            +   H      + +    P    V K + H T+P +    + G   E +P Y+ T+
Sbjct: 152 GFLRNHGAKFSSSKMFSPTPFYIDVDKLRPHKTKPHKAHGANSGGAPESSPHYRPTQ 208


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 69  PVHYPAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQ 115
           P H P P Q+ A    P  +P  H   P   FS  RG  +   P ++
Sbjct: 820 PTHKPPPPQYSAKRGCPGSEPPPHKPLPPH-FSAKRGCPVSYPPTHK 865


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 77  QHEAPAAKPVYKPQVHYTRPQEGF 100
           Q + P  KPV KP +H T+ + GF
Sbjct: 467 QPQLPFRKPVRKPLIHCTQKRRGF 490


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 73  PAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQQTEGHAHESHD 126
           PA    + P+++P Y+   H +   EG +   G  LE  P+Y+ ++ +    +D
Sbjct: 295 PAYSPSDIPSSEPQYE---HKSHSSEGVASDLGPGLETVPLYEGSDAYQGAPYD 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,797,286
Number of Sequences: 59808
Number of extensions: 336702
Number of successful extensions: 546
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 16
length of query: 210
length of database: 16,821,457
effective HSP length: 79
effective length of query: 131
effective length of database: 12,096,625
effective search space: 1584657875
effective search space used: 1584657875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)