GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000438-TA|BGIBMGA000438-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 160 GDVVKGVYGLHE-ADGSVRTVEYSSDKHKGFSAIVKHSAP 198
           G  +K V GL E A+G++ TVE  S+   GF   +    P
Sbjct: 234 GRQIKLVEGLEEEAEGAI-TVELQSENIPGFDDYMASLTP 272


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 177 RTVEYSSDKHKGFSAIVKHSAPGQH 201
           R++E S D   G S +  HS+ G H
Sbjct: 61  RSLEGSYDSSSGDSPVSSHSSNGIH 85


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 160 GDVVKGVYGLHE-ADGSVRTVEYSSDKHKGFSAIVKHSAP 198
           G  +K V GL E A+G++ TVE  S+   GF   +    P
Sbjct: 324 GRQIKLVEGLEEEAEGAI-TVELQSENIPGFDDYMASLTP 362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/21 (23%), Positives = 13/21 (61%)

Query: 190 SAIVKHSAPGQHVHIESHHEN 210
           + ++K     +H H+++HH +
Sbjct: 130 TGLIKQETLQRHHHLQNHHHH 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,008
Number of Sequences: 429
Number of extensions: 2801
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)