Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000437-TA|BGIBMGA000437-PA|IPR000618|Insect cuticle
protein
         (256 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       30   0.015

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 4/36 (11%)

Query: 196 KYQHEIRDGD-VVKGEYSL--HEADGSIRTVKYTAD 228
           KY+ E R  D  + GEY +  H+ DGS+R V+YTAD
Sbjct: 204 KYRVEERTSDGFIVGEYGVVSHD-DGSLRGVRYTAD 238


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,842
Number of Sequences: 317
Number of extensions: 1317
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 256
length of database: 114,650
effective HSP length: 55
effective length of query: 201
effective length of database: 97,215
effective search space: 19540215
effective search space used: 19540215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)