Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000437-TA|BGIBMGA000437-PA|IPR000618|Insect cuticle
protein
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    29   0.87 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   3.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   6.2  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 188 EDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKKSGFNAE 236
           E  +  +N   H   D ++ +  Y   E + S  T+  ++D K G NA+
Sbjct: 8   EHDNLNENYNSHLSSDDEIAEEGYDFEELEASASTITSSSDLKDGKNAK 56


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 23  ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTNHAIPVK 66
           AL IVI +TVG+ QE+        L  LV H  +V +  KT H +  K
Sbjct: 88  ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 176 YAYPKYAFEYKIEDPHTGDNKYQHEI 201
           Y   KYA E  I+D HT DN ++  I
Sbjct: 157 YGKTKYAIENIIKDLHTSDNTWRGAI 182


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 30  LTVGYCQEHNHHGYTLQTLVKHDVPQKIKTNHAIPVK 66
           L + +   H  +   L+ ++ + +P +I  NH +P K
Sbjct: 255 LEIAFSLCHKGYNRNLELILSYWIPTRILVNHQLPTK 291


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,294
Number of Sequences: 5004
Number of extensions: 23915
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)