Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000437-TA|BGIBMGA000437-PA|IPR000618|Insect cuticle
protein
         (256 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)                 32   0.53 
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_47890| Best HMM Match : DUF652 (HMM E-Value=7)                      28   8.6  

>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
          Length = 872

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 185 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKKSGFNAEVINSG 241
           YK  +P   D   +  ++DG   KG Y L+   GS+  +++   K  G   E   SG
Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSG 190


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 36  QEHNHHGYTLQTLVKHDVPQKIKTNHAIPVK 66
           Q+H H    L+T+VK D P  ++T+ +  +K
Sbjct: 658 QDHMHESLKLKTIVKGDAPTSLQTSTSANIK 688


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 188 EDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKKSGFNAEVINSGLSK 244
           +D   GDN    +  DGDV + EY   + DG     KY +D  +G + E+    L+K
Sbjct: 38  DDYEYGDNVGDGDDDDGDVDEDEYDKKD-DGDYDDDKYDSD-DAGLHGEITEWDLNK 92


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 208  KGEYSLHEADGSIRTVKYTADKKSGF 233
            KG Y  H+ DG  RT++Y +    G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_47890| Best HMM Match : DUF652 (HMM E-Value=7)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 180 KYAFEYKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTAD 228
           KYA   K+  P     KY H++    + KG+Y+L+    ++   KY  D
Sbjct: 79  KYALNVKV--PKLDKGKYAHDVTVPTLDKGKYALNVTVPTLDKGKYAFD 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,578,210
Number of Sequences: 59808
Number of extensions: 180449
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 9
length of query: 256
length of database: 16,821,457
effective HSP length: 81
effective length of query: 175
effective length of database: 11,977,009
effective search space: 2095976575
effective search space used: 2095976575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)