Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000437-TA|BGIBMGA000437-PA|IPR000618|Insect cuticle
protein
         (256 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    34   0.11 
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U55374-6|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    28   7.5  
U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   7.5  
U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   7.5  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   7.5  

>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 6   TLVVRAYDSCKSSKKPKALGIVIFLTVGYCQEHNHHGYTLQTLVKHDVPQKIKTNHAIPV 65
           T  +R +D    SK+  A      +T+ YC EH  HGY L+   +H  P+    +  +PV
Sbjct: 379 TAFIRVFDWRIVSKREGAT-----VTIDYCLEHQQHGYDLEP--RHFGPRSATNSRGLPV 431

Query: 66  KTAHV 70
              +V
Sbjct: 432 AKDYV 436


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 24  LGIVIFLTVGYCQEHNHH--GYTLQTLVKHDVPQKIKTNHAIPVKTAHVAPVYET 76
           LG+V  +  G CQ    +  G T Q LVK  V   I      PV  AH   ++E+
Sbjct: 70  LGVVFSILTGMCQPFESYTLGETSQVLVK--VTNAINNKTIDPVDLAHAYKLFES 122


>U55374-6|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 185 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 230
           Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 19  YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 64


>U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 185  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 230
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1659 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1704


>U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 185  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 230
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 185  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 230
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,054,950
Number of Sequences: 27539
Number of extensions: 131125
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 6
length of query: 256
length of database: 12,573,161
effective HSP length: 80
effective length of query: 176
effective length of database: 10,370,041
effective search space: 1825127216
effective search space used: 1825127216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)