Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000436-TA|BGIBMGA000436-PA|IPR000618|Insect cuticle
protein
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   4.6  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    24   6.1  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.1  

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 17/67 (25%)

Query: 63  PHTGDH-KSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGD----HHSGFHADVKYSTHHI 117
           P + D  ++ HES + ++ K   S     GS  H + H      HH G H       HH 
Sbjct: 256 PKSSDSSETSHESSNSNLKKSSES-----GSTNHHNNHESDKDLHHEGHH-------HHH 303

Query: 118 VPHHHHY 124
             HHHH+
Sbjct: 304 HHHHHHH 310



 Score = 24.6 bits (51), Expect = 4.6
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 59  KVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYSTHHIV 118
           K SD     H+S + +       G  + H    S + + + G HH           HH  
Sbjct: 257 KSSDSSETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHH-----------HHHH 305

Query: 119 PHHHH 123
            HHHH
Sbjct: 306 HHHHH 310


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 84  YSLHQPDGSIRHVDYHGDHHSGFHADV 110
           Y  H PD  + H D+ GD  +  H DV
Sbjct: 714 YPSH-PDSLLEHQDHAGDTENEMHDDV 739


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 57  EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 105
           +Y  S P T  + S+ ++   D V G    +   GS  H   HG  H G
Sbjct: 173 DYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRG 220


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 79

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 57 EYKVSDPHTGDHKSQHESRDGDVVKGY-YSLHQPDGS 92
          E +  + H G+   +H+   G+V  GY  ++H P+ S
Sbjct: 28 EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 54   FDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSI 93
            F+ +Y +  P TGD  + H +RD  V   + S  +  G I
Sbjct: 2928 FNPDYALFLPVTGDATTFHPNRDSSVNPDHLSFFKFTGRI 2967


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,910
Number of Sequences: 5004
Number of extensions: 17939
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)